This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12283 (16 seq.)
>WENV180043519
LQAI01000219
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
410
319
-
Ser
TGA
[ENA]
¢þ
>WENV180044021
LQAJ01000333
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
11822
11913
+
Ser
TGA
[ENA]
¢þ
>WENV183747563
PPCM01005267
[PPCM] marine sediment metagenome; marine sediment
1354
1263
-
Ser
TGA
[ENA]
¢þ
>WENV170417765
CEUM01001982
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
62028
61937
-
Ser
TGA
[ENA]
¢þ
>WENV170438192
CEUU01106248
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4918
4827
-
Ser
TGA
[ENA]
¢þ
>WENV170440844
CEUV01133370
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1364
1455
+
Ser
TGA
[ENA]
¢þ
>WENV170898658
MDTD01129431
[MDTD] marine metagenome; seawater
19543
19634
+
Ser
TGA
[ENA]
¢þ
>C181226983
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
3394132
3394223
+
Ser
TGA
-
¡û
>W1911737991
QTZO01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
280776
280867
+
Ser
TGA
[ENA]
¡û
>W10111374
ADDI01000008
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
58450
58359
-
Ser
TGA
[ENA]
¡û
>C11106870
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2324367
2324276
-
Ser
TGA
[Ensembl]
¡û
>W11114317
ADDI01000008
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
58450
58359
-
Ser
TGA
[ENA]
¡û
>W11149096
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
90321
90412
+
Ser
TGA
[ENA]
¡û
>C121008964
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
90321
90412
+
Ser
TGA
[Ensembl]
¡û
>C161068271
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
3075481
3075390
-
Ser
TGA
[Ensembl]
¡û
>C131017952
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
674059
673968
-
Ser
TGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK