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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123335 (42 seq.)
>W1710811727
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
627059
627143
+
Leu
GAG
[ENA]
¡û
>W1710863639
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
480320
480404
+
Leu
GAG
[ENA]
¡û
>W131230604
AUHT01000006
Gammaproteobacteria
Lysobacter defluvii DSM 18482 [AUHT]
190864
190948
+
Leu
GAG
[ENA]
¡û
>W131235389
AULN01000018
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
19214
19298
+
Leu
GAG
[ENA]
¡û
>W1711424139
MIDV01000020
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
3904
3820
-
Leu
GAG
[ENA]
¡û
>W1711424211
MIDW01000133
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
3364
3448
+
Leu
GAG
[ENA]
¡û
>WENV180291362
OBIV01045211
[OBIV] soil metagenome; Clay
129
213
+
Leu
GAG
[ENA]
¢þ
>W141149612
AWZR01000005
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
242655
242739
+
Leu
GAG
[ENA]
¡û
>WENV183729041
PJTQ01003079
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1943
2027
+
Leu
GAG
[ENA]
¢þ
>WENV170574158
FLYM01009885
[FLYM] hot springs metagenome; Sediment
275
359
+
Leu
GAG
[ENA]
¢þ
>WENV170652935
JRYH01121646
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
333
416
+
Leu
GAG
[ENA]
¢þ
>C181021686
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
2929991
2930075
+
Leu
GAG
-
¡û
>C181080819
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
1528750
1528834
+
Leu
GAG
-
¡û
>C181180371
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
693855
693939
+
Leu
GAG
-
¡û
>C181200082
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1331530
1331446
-
Leu
GAG
-
¡û
>C191186012
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1801699
1801783
+
Leu
GAG
-
¡û
>C191189067
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
1531373
1531457
+
Leu
GAG
-
¡û
>W1911162536
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
762968
763052
+
Leu
GAG
[ENA]
¡û
>W1911218356
NRQR01000023
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
39406
39322
-
Leu
GAG
[ENA]
¡û
>W1911283702
NTJF01000013
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
83380
83296
-
Leu
GAG
[ENA]
¡û
>W1911283745
NTJG01000014
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
12355
12439
+
Leu
GAG
[ENA]
¡û
>W1911283791
NTJH01000012
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
83381
83297
-
Leu
GAG
[ENA]
¡û
>W1911283820
NTJI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
527386
527302
-
Leu
GAG
[ENA]
¡û
>W1810914490
QVPD01000011
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
28871
28787
-
Leu
GAG
[ENA]
¡û
>W1511348463
JRKJ01000008
Gammaproteobacteria
Lysobacter dokdonensis DS-58 [JRKJ]
10925
11009
+
Leu
GAG
[ENA]
¡û
>W1511511117
JXSS01000002
Gammaproteobacteria
Lysobacter sp. A03 [JXSS]
36946
37030
+
Leu
GAG
[ENA]
¡û
>W1511547580
JZRB01000023
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
58746
58830
+
Leu
GAG
[ENA]
¡û
>W1511582556
LASZ01000005
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
116455
116371
-
Leu
GAG
[ENA]
¡û
>W1610026732
AVBH01000069
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
6478
6394
-
Leu
GAG
[ENA]
¡û
>W1610027249
AVPS01000004
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
134466
134550
+
Leu
GAG
[ENA]
¡û
>W1610027288
AVPT01000004
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
35980
36064
+
Leu
GAG
[ENA]
¡û
>W1610027330
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
84804
84888
+
Leu
GAG
[ENA]
¡û
>W1610675824
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
627059
627143
+
Leu
GAG
[ENA]
¡û
>W1610725985
LMFH01000005
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
480320
480404
+
Leu
GAG
[ENA]
¡û
>W1710022781
AVBH01000069
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
6478
6394
-
Leu
GAG
[ENA]
¡û
>W1710023483
AVPS01000004
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
134466
134550
+
Leu
GAG
[ENA]
¡û
>W1710023522
AVPT01000004
Gammaproteobacteria
Lysobacter arseniciresistens ZS79 [AVPT]
35980
36064
+
Leu
GAG
[ENA]
¡û
>W1710023564
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
84804
84888
+
Leu
GAG
[ENA]
¡û
>W1710548691
FODZ01000002
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
96544
96460
-
Leu
GAG
[ENA]
¡û
>W1710555184
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
738419
738503
+
Leu
GAG
[ENA]
¡û
>W1710579645
FPIS01000001
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
181715
181799
+
Leu
GAG
[ENA]
¡û
>W1710601713
FUXP01000001
Gammaproteobacteria
Lysobacter spongiicola DSM 21749 [FUXP]
549641
549557
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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