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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127084 (40 seq.)
>A171002444
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
96087
96161
+
Val
CAC
-
¡û
>A171002619
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1974931
1975005
+
Val
CAC
-
¡û
>A171003044
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1569487
1569562
+
Val
CAC
-
¡û
>A171003952
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1986364
1986438
+
Val
CAC
-
¡û
>A171005788
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
570925
571000
+
Val
CAC
-
¡û
>A171006862
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2737898
2737973
+
Val
CAC
-
¡û
>A171007223
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
227954
228028
+
Val
CAC
-
¡û
>At0753
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1302449
1302523
+
Val
CAC
[Ensembl]
¡û
>WENV170659938
JXWS01048842
[JXWS] soil metagenome; rice field; elevated CO2
252
328
+
Val
CAC
[ENA]
¢þ
>WENV170701916
LKMJ01000110
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6408
6482
+
Val
CAC
[ENA]
¢þ
>WENV170702416
LKMJ01001819
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10070
10146
+
Val
CAC
[ENA]
¢þ
>PL191000876
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
298556
298630
+
Val
CAC
[ENA]
¡û
>W1910011035
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
882549
882475
-
Val
CAC
[ENA]
¡û
>W1910175117
BIXZ01000004
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
90231
90157
-
Val
CAC
[ENA]
¡û
>W1910226731
FNBK01000007
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
44309
44235
-
Val
CAC
[ENA]
¡û
>W1910228399
FNOF01000012
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
71105
71031
-
Val
CAC
[ENA]
¡û
>W1910229683
FOCX01000001
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
5262
5188
-
Val
CAC
[ENA]
¡û
>W1910568519
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
1366962
1367036
+
Val
CAC
[ENA]
¡û
>W1910569053
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
146304
146229
-
Val
CAC
[ENA]
¡û
>W1910583042
JXAO01000006
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
63444
63518
+
Val
CAC
[ENA]
¡û
>W1910617611
LIUF01000005
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
88582
88504
-
Val
CAC
[ENA]
¡û
>W1910646112
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1336901
1336975
+
Val
CAC
[ENA]
¡û
>W1911709440
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
153232
153306
+
Val
CAC
[ENA]
¡û
>W1911709577
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
153404
153478
+
Val
CAC
[ENA]
¡û
>W1610003264
AFNT02000008
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
40438
40364
-
Val
CAC
[ENA]
¡û
>W1610004140
AGIN01000013
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
13926
14003
+
Val
CAC
[ENA]
¡û
>W1610012233
AOIE01000001
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
1095
1018
-
Val
CAC
[ENA]
¡û
>W1610012693
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
131544
131621
+
Val
CAC
[ENA]
¡û
>W1610012810
AOIU01000022
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
9953
9879
-
Val
CAC
[ENA]
¡û
>W1610014154
AOLQ01000067
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
71011
70937
-
Val
CAC
[ENA]
¡û
>W1610014161
AOLR01000002
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
141818
141893
+
Val
CAC
[ENA]
¡û
>W1610014249
AOLS01000124
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
87137
87059
-
Val
CAC
[ENA]
¡û
>W1610014292
AOLW01000050
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
27759
27685
-
Val
CAC
[ENA]
¡û
>W1610014357
AOLX01000027
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
99291
99213
-
Val
CAC
[ENA]
¡û
>W1610014380
AOLY01000009
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
197276
197202
-
Val
CAC
[ENA]
¡û
>W1610014460
AOMA01000063
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
98840
98765
-
Val
CAC
[ENA]
¡û
>W1610061896
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1289275
1289350
+
Val
CAC
[ENA]
¡û
>W1610061960
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1652110
1652031
-
Val
CAC
[ENA]
¡û
>W1610881017
LRHL01000012
Euryarchaeota
Haloarcula sp. K1 [LRHL]
48933
49007
+
Val
CAC
[ENA]
¡û
>W1610925049
LTAZ01000004
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
486385
486311
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK