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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129269 (42 seq.)
>A171003739
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2971387
2971311
-
Met
CAT
-
¡û
>A171006180
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
787728
787652
-
Met
CAT
-
¡û
>A171006197
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
624676
624750
+
Met
CAT
-
¡û
>A171007294
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
849217
849142
-
Met
CAT
-
¡û
>WENV180318158
OBKM01000001
[OBKM] metagenome; water
75453
75379
-
fMet
CAT
[ENA]
¢þ
>WENV180318167
OBKM01000014
[OBKM] metagenome; water
10570
10646
+
fMet
CAT
[ENA]
¢þ
>WENV180318195
OBKM01000059
[OBKM] metagenome; water
9210
9285
+
fMet
CAT
[ENA]
¢þ
>WENV170659852
JXWS01008585
[JXWS] soil metagenome; rice field; elevated CO2
910
986
+
Met
CAT
[ENA]
¢þ
>WENV170679562
LFCJ01000025
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
53631
53555
-
Met
CAT
[ENA]
¢þ
>WENV170681064
LFFM01000014
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
25432
25357
-
Met
CAT
[ENA]
¢þ
>WENV170681578
LFFM01001500
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
15173
15097
-
Met
CAT
[ENA]
¢þ
>WENV170681884
LFFM01003878
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8808
8732
-
Met
CAT
[ENA]
¢þ
>WENV170682121
LFFM01006257
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1241
1165
-
Met
CAT
[ENA]
¢þ
>WENV170701794
LKMJ01000024
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
24186
24110
-
Met
CAT
[ENA]
¢þ
>WENV170702567
LKMJ01002565
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13265
13189
-
Met
CAT
[ENA]
¢þ
>At0821
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
430222
430148
-
Met
CAT
[Ensembl]
¡û
>At1713
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
692545
692471
-
Met
CAT
[Ensembl]
¡û
>W1910228613
FNVN01000006
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
100596
100671
+
Met
CAT
[ENA]
¡û
>W1910229572
FNYR01000007
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
49841
49765
-
Met
CAT
[ENA]
¡û
>W1910229746
FODV01000002
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
287611
287686
+
Met
CAT
[ENA]
¡û
>W1910229785
FODV01000025
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
42117
42042
-
Met
CAT
[ENA]
¡û
>W1910230010
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
941036
941111
+
Met
CAT
[ENA]
¡û
>W1910230404
FOPZ01000008
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
67629
67554
-
Met
CAT
[ENA]
¡û
>W1910547247
FZNQ01000001
Euryarchaeota
Halorubrum vacuolatum DSM 8800 [FZNQ]
116918
116993
+
Met
CAT
[ENA]
¡û
>W1910828020
MWUK01000003
Euryarchaeota
Halolamina sp. CBA1230 [MWUK]
2805898
2805823
-
Met
CAT
[ENA]
¡û
>W1910912248
NHPC01000025
Euryarchaeota
Halorubrum ezzemoulense Fb21 [NHPC]
20296
20371
+
Met
CAT
[ENA]
¡û
>W1910912315
NHPE01000063
Euryarchaeota
Halorubrum sp. Eb13 [NHPE]
7849
7924
+
Met
CAT
[ENA]
¡û
>W1911580820
PEND01000004
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
89472
89396
-
Met
CAT
[ENA]
¡û
>W1911709534
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
696945
697019
+
Met
CAT
[ENA]
¡û
>W1911709764
QPLU01000001
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
416875
416952
+
Met
CAT
[ENA]
¡û
>W1911709768
QPLU01000001
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
1381806
1381883
+
Met
CAT
[ENA]
¡û
>W1911717765
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
926911
926988
+
Met
CAT
[ENA]
¡û
>W1610011820
AOHU01000097
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
132676
132602
-
Met
CAT
[ENA]
¡û
>W1610012927
AOIW01000079
Euryarchaeota
Halorubrum terrestre JCM 10247 [AOIW]
18272
18196
-
Met
CAT
[ENA]
¡û
>W1610013135
AOJH01000082
Euryarchaeota
Halorubrum kocurii JCM 14978 [AOJH]
51338
51413
+
Met
CAT
[ENA]
¡û
>W1610013275
AOJK01000073
Euryarchaeota
Halorubrum californiense DSM 19288 [AOJK]
76142
76219
+
Met
CAT
[ENA]
¡û
>W1610013600
AOLF01000038
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
35214
35288
+
Met
CAT
[ENA]
¡û
>W1610013613
AOLG01000009
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
248302
248376
+
Met
CAT
[ENA]
¡û
>W1610013627
AOLG01000028
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
1571
1495
-
Met
CAT
[ENA]
¡û
>W1610013681
AOLH01000023
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
65577
65503
-
Met
CAT
[ENA]
¡û
>W1610013874
AOLL01000011
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
404039
403965
-
Met
CAT
[ENA]
¡û
>W1610061855
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
650320
650395
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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