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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131331 (83 seq.)
>A171002695
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
387300
387375
+
Arg
TCT
-
¡û
>A171003192
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
275067
274993
-
Arg
TCT
-
¡û
>A171003463
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
127731
127805
+
Arg
TCT
-
¡û
>A171004123
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
131766
131840
+
Arg
TCT
-
¡û
>A171006910
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
1051378
1051452
+
Arg
TCT
-
¡û
>A171006973
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2615017
2614943
-
Arg
TCT
-
¡û
>A178000123
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1829336
1829231
-
Arg
TCT
-
¡û
>A178000157
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
288383
288486
+
Arg
TCT
-
¡û
>A178000397
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
22451
22555
+
Arg
TCT
-
¡û
>A178000562
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
2082696
2082801
+
Arg
TCT
-
¡û
>A178000672
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1941214
1941318
+
Arg
TCT
-
¡û
>A178000694
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1570699
1570802
+
Arg
TCT
-
¡û
>A179000367
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1537556
1537453
-
Arg
TCT
-
¡û
>WENV180318400
OBKM01000687
[OBKM] metagenome; water
14403
14477
+
Arg
TCT
[ENA]
¢þ
>WENV170009247
APHM01021865
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4510
4584
+
Arg
TCT
[ENA]
¢þ
>WENV170679595
LFCJ01000062
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
41106
41032
-
Arg
TCT
[ENA]
¢þ
>WENV170679596
LFCJ01000063
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
43471
43545
+
Arg
TCT
[ENA]
¢þ
>WENV170679906
LFCJ01001355
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
52
126
+
Arg
TCT
[ENA]
¢þ
>WENV170680231
LFCJ01006353
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
8519
8442
-
Arg
TCT
[ENA]
¢þ
>WENV170680282
LFCJ01006987
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
77
3
-
Arg
TCT
[ENA]
¢þ
>WENV170680297
LFCJ01007516
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
842
768
-
Arg
TCT
[ENA]
¢þ
>WENV170680338
LFCJ01008907
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6681
6755
+
Arg
TCT
[ENA]
¢þ
>WENV170680423
LFCJ01011254
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6095
6169
+
Arg
TCT
[ENA]
¢þ
>WENV170680553
LFCJ01014658
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
76
2
-
Arg
TCT
[ENA]
¢þ
>WENV170681474
LFFM01001041
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4582
4659
+
Arg
TCT
[ENA]
¢þ
>WENV170681490
LFFM01001109
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
52
126
+
Arg
TCT
[ENA]
¢þ
>WENV170681515
LFFM01001167
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
76
2
-
Arg
TCT
[ENA]
¢þ
>WENV170681635
LFFM01001772
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10026
10100
+
Arg
TCT
[ENA]
¢þ
>WENV170681848
LFFM01003462
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8252
8178
-
Arg
TCT
[ENA]
¢þ
>WENV170681942
LFFM01004120
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
8778
8704
-
Arg
TCT
[ENA]
¢þ
>WENV170682024
LFFM01005060
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
48
125
+
Arg
TCT
[ENA]
¢þ
>WENV170682077
LFFM01005792
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
76
2
-
Arg
TCT
[ENA]
¢þ
>WENV170702105
LKMJ01000521
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
20331
20405
+
Arg
TCT
[ENA]
¢þ
>WENV170702337
LKMJ01001360
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2323
2397
+
Arg
TCT
[ENA]
¢þ
>WENV170702588
LKMJ01002761
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13180
13254
+
Arg
TCT
[ENA]
¢þ
>WENV170703133
LKMJ01006927
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
21
98
+
Arg
TCT
[ENA]
¢þ
>WENV170703440
LKMJ01011662
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1238
1161
-
Arg
TCT
[ENA]
¢þ
>WENV170703589
LKMJ01014154
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
901
827
-
Arg
TCT
[ENA]
¢þ
>WENV170703609
LKMJ01014495
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4871
4945
+
Arg
TCT
[ENA]
¢þ
>WENV170703618
LKMJ01014595
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4751
4677
-
Arg
TCT
[ENA]
¢þ
>WENV170703912
LKMJ01018593
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6050
5976
-
Arg
TCT
[ENA]
¢þ
>WENV170703995
LKMJ01020415
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5633
5559
-
Arg
TCT
[ENA]
¢þ
>WENV170704161
LKMJ01023990
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5111
5037
-
Arg
TCT
[ENA]
¢þ
>WENV170704186
LKMJ01024661
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2109
2183
+
Arg
TCT
[ENA]
¢þ
>W1910227114
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
625746
625671
-
Arg
TCT
[ENA]
¡û
>W1910229342
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
163285
163211
-
Arg
TCT
[ENA]
¡û
>W1910229917
FOIC01000011
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
81531
81456
-
Arg
TCT
[ENA]
¡û
>W1910229958
FOIS01000004
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
380670
380744
+
Arg
TCT
[ENA]
¡û
>W1910230247
FOKW01000005
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
217521
217447
-
Arg
TCT
[ENA]
¡û
>W1910230336
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
131970
132044
+
Arg
TCT
[ENA]
¡û
>W1910230775
FOZK01000001
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
120555
120629
+
Arg
TCT
[ENA]
¡û
>W1910230826
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
371954
372028
+
Arg
TCT
[ENA]
¡û
>W1910340477
FTNO01000002
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
338696
338771
+
Arg
TCT
[ENA]
¡û
>W1910340520
FTNP01000007
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
114134
114060
-
Arg
TCT
[ENA]
¡û
>W1910340562
FTNR01000014
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
73540
73466
-
Arg
TCT
[ENA]
¡û
>W1910568541
JDTH01000001
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
306044
305969
-
Arg
TCT
[ENA]
¡û
>W1910572573
JMIP02000019
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
15726
15800
+
Arg
TCT
[ENA]
¡û
>W1910572729
JNCS01000011
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
45776
45850
+
Arg
TCT
[ENA]
¡û
>W1910575877
JROF01000011
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
32596
32670
+
Arg
TCT
[ENA]
¡û
>W1910583031
JXAN01000123
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
3575
3501
-
Arg
TCT
[ENA]
¡û
>W1911433987
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3698491
3698417
-
Arg
TCT
[ENA]
¡û
>W1911572237
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1354664
1354590
-
Arg
TCT
[ENA]
¡û
>W1911696816
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
335028
334954
-
Arg
TCT
[ENA]
¡û
>W1911717838
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1647564
1647489
-
Arg
TCT
[ENA]
¡û
>W1610003650
AGCY01000499
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
4510
4584
+
Arg
TCT
[ENA]
¡û
>W1610005357
AJVG01000001
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
178875
178801
-
Arg
TCT
[ENA]
¡û
>W1610011955
AOHX01000029
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
148007
147933
-
Arg
TCT
[ENA]
¡û
>W1610012001
AOHY01000025
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
39827
39901
+
Arg
TCT
[ENA]
¡û
>W1610012045
AOHZ01000047
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
22723
22797
+
Arg
TCT
[ENA]
¡û
>W1610012127
AOIB01000015
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
70984
70910
-
Arg
TCT
[ENA]
¡û
>W1610012217
AOID01000047
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
109820
109895
+
Arg
TCT
[ENA]
¡û
>W1610012295
AOII01000039
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
16828
16754
-
Arg
TCT
[ENA]
¡û
>W1610012345
AOIJ01000053
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
8093
8167
+
Arg
TCT
[ENA]
¡û
>W1610012397
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
204500
204574
+
Arg
TCT
[ENA]
¡û
>W1610012639
AOIQ01000012
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
53450
53375
-
Arg
TCT
[ENA]
¡û
>W1610012791
AOIT01000052
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
2770
2845
+
Arg
TCT
[ENA]
¡û
>W1610012799
AOIU01000006
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
28616
28691
+
Arg
TCT
[ENA]
¡û
>W1610014423
AOLZ01000033
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
1711
1785
+
Arg
TCT
[ENA]
¡û
>W1610671369
LKCV01000040
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
31958
31884
-
Arg
TCT
[ENA]
¡û
>W1610682146
LKMK01000153
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
842
768
-
Arg
TCT
[ENA]
¡û
>W1610682531
LKNC01000015
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
4582
4659
+
Arg
TCT
[ENA]
¡û
>W1610682660
LKNG01000092
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
8252
8178
-
Arg
TCT
[ENA]
¡û
>W1610925059
LTAZ01000006
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
26851
26776
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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