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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145313 (54 seq.)
>W1711388546
MEHS01000004
Alphaproteobacteria
Rhodobaca barguzinensis [MEHS]
2380807
2380724
-
Pseudo
GTA
[ENA]
¡û
>W1711388588
MEHT01000045
Alphaproteobacteria
Roseinatronobacter thiooxidans [MEHT]
194015
193932
-
Pseudo
GTA
[ENA]
¡û
>W1711572462
MNBW01000020
Alphaproteobacteria
Nioella nitratireducens [MNBW]
15263
15346
+
Tyr
GTA
[ENA]
¡û
>W1711712853
MTCO01000093
Alphaproteobacteria
Brevirhabdus pacifica [MTCO]
11351
11434
+
Pseudo
GTA
[ENA]
¡û
>C172000044
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
3784057
3783974
-
Tyr
GTA
-
¡û
>WENV180357541
OBNN01026000
[OBNN] marine metagenome; Coastal water
125
208
+
Tyr
GTA
[ENA]
¢þ
>WENV180360946
OBNU01067655
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
107
190
+
Tyr
GTA
[ENA]
¢þ
>WENV182543805
OJBD01000001
[OJBD] seawater metagenome; Sea water
202287
202370
+
Tyr
GTA
[ENA]
¢þ
>WENV183060581
OLHY01000410
[OLHY] seawater metagenome; Sea water
1984
1901
-
Tyr
GTA
[ENA]
¢þ
>WENV183748309
PPFU01027680
[PPFU] hypolithon metagenome; Antarctic Hypolithon
84
1
-
Tyr
GTA
[ENA]
¢þ
>WENV183750190
PPFU01269390
[PPFU] hypolithon metagenome; Antarctic Hypolithon
323
240
-
Tyr
GTA
[ENA]
¢þ
>WENV170550994
CXWF01062926
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14153
14070
-
Tyr
GTA
[ENA]
¢þ
>WENV170705273
LLEQ01002467
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
620
703
+
Tyr
GTA
[ENA]
¢þ
>C181052319
CP021404
Alphaproteobacteria
Pacificitalea manganoxidans DY25 [CP021404]
806601
806684
+
Tyr
GTA
-
¡û
>C181116784
CP025408
Alphaproteobacteria
Paracoccus tegillarcae BM15 [CP025408]
2281218
2281135
-
Tyr
GTA
-
¡û
>C181169776
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
2569483
2569566
+
Tyr
GTA
-
¡û
>C181194153
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
125469
125552
+
Tyr
GTA
-
¡û
>W142000114
APGJ01000007
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
509791
509708
-
Tyr
GTA
[ENA]
¡û
>W142000727
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
2602761
2602678
-
Tyr
GTA
[ENA]
¡û
>W1910442927
FWFQ01000002
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
99384
99467
+
Tyr
GTA
[ENA]
¡û
>W1910443196
FWFW01000005
Alphaproteobacteria
Pacificibacter marinus CECT 7971 [FWFW]
77420
77503
+
Tyr
GTA
[ENA]
¡û
>W1910443273
FWFY01000001
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
118391
118308
-
Tyr
GTA
[ENA]
¡û
>W1910443329
FWFZ01000006
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
174537
174454
-
Tyr
GTA
[ENA]
¡û
>W1911189698
NQWH01000004
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
143301
143384
+
Tyr
GTA
[ENA]
¡û
>W1911696504
QMEJ01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
545274
545357
+
Tyr
GTA
[ENA]
¡û
>W1911813190
QZEV01000010
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
10128
10045
-
Tyr
GTA
[ENA]
¡û
>W1810090263
PGFI01000012
Alphaproteobacteria
Brevirhabdus pacifica DSM 27767 [PGFI]
277337
277420
+
Tyr
GTA
[ENA]
¡û
>W1810486761
QAYC01000007
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
225250
225333
+
Tyr
GTA
[ENA]
¡û
>W1810503555
QBKF01000007
Alphaproteobacteria
Pararhodobacter aggregans DSM 18938 [QBKF]
107582
107499
-
Tyr
GTA
[ENA]
¡û
>W1810504540
QBKZ01000028
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
23056
23139
+
Tyr
GTA
[ENA]
¡û
>W1810535437
QDDR01000007
Alphaproteobacteria
Pararhodobacter aggregans D1-19 [QDDR]
107731
107648
-
Tyr
GTA
[ENA]
¡û
>W1810543595
QDKM01000003
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
333873
333956
+
Tyr
GTA
[ENA]
¡û
>W1810577989
QEOR01000001
Alphaproteobacteria
Thalassobacter stenotrophicus LXJ116 [QEOR]
267700
267617
-
Tyr
GTA
[ENA]
¡û
>W1810583997
QEYD01000011
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
61442
61359
-
Tyr
GTA
[ENA]
¡û
>W1810672107
QJTE01000004
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
124079
124162
+
Tyr
GTA
[ENA]
¡û
>W1810684514
QKYL01000212
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
162138
162055
-
Tyr
GTA
[ENA]
¡û
>W1810722636
QNVJ01000041
Alphaproteobacteria
Alkalilacustris brevis 34079 [QNVJ]
13009
12926
-
Tyr
GTA
[ENA]
¡û
>C11200018
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1987910
1987993
+
Tyr
GTA
[Ensembl]
¡û
>C11200019
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
2273665
2273748
+
Tyr
GTA
[Ensembl]
¡û
>C162000042
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
2830067
2829984
-
Tyr
GTA
[Ensembl]
¡û
>C162000122
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
2377327
2377410
+
Tyr
GTA
-
¡û
>W1620001620
LRRR01000033
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
14739
14822
+
Tyr
GTA
[ENA]
¡û
>W1620001682
LUOO01000008
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
4957
4874
-
Tyr
GTA
[ENA]
¡û
>WENV078466
AAGA01018075
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
316
233
-
Tyr
GTA
[ENA]
>W1720000942
FNAT01000002
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
443083
443000
-
Tyr
GTA
[ENA]
¡û
>W1720000945
FNBL01000002
Alphaproteobacteria
Celeribacter baekdonensis [FNBL]
320392
320309
-
Tyr
GTA
[ENA]
¡û
>W1720001075
FOHO01000001
Alphaproteobacteria
Paracoccus homiensis [FOHO]
127261
127344
+
Tyr
GTA
[ENA]
¡û
>W1720001210
FTOU01000001
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
641366
641283
-
Tyr
GTA
[ENA]
¡û
>W1720002074
LRRR01000033
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
14739
14822
+
Tyr
GTA
[ENA]
¡û
>W1720002154
LUOO01000008
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
4957
4874
-
Tyr
GTA
[ENA]
¡û
>W1720002906
MJAP01000013
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
182483
182566
+
Tyr
GTA
[ENA]
¡û
>W1720003167
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3436268
3436351
+
Tyr
GTA
[ENA]
¡û
>W1710015530
AQQT01000002
Alphaproteobacteria
Loktanella sp. 22II-4b [AQQT]
278818
278901
+
Pseudo
GTA
[ENA]
¡û
>W132000018
AMRK01000002
Alphaproteobacteria
Celeribacter baekdonensis B30 [AMRK]
167050
167133
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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