This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146048 (13 seq.)
>W1710798584
LJTR01000233
Planctomycetota
Phycisphaerae bacterium SG8_4 [LJTR]
3471
3396
-
Arg
TCG
[ENA]
¡û
>W1711421161
MHYB01000066
Planctomycetota
Planctomycetes bacterium GWF2_50_10 [MHYB]
13349
13424
+
Arg
TCG
[ENA]
¡û
>W1711421180
MHYC01000019
Planctomycetota
Planctomycetes bacterium RBG_13_44_8b [MHYC]
23338
23413
+
Arg
TCG
[ENA]
¡û
>W1711421407
MHYK01000303
Planctomycetota
Planctomycetes bacterium RBG_16_55_9 [MHYK]
4866
4791
-
Arg
TCG
[ENA]
¡û
>WENV180083386
MPMD02051175
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
264
189
-
Arg
TCG
[ENA]
¢þ
>WENV181413813
OGCK01142725
[OGCK] hot springs metagenome; hot spring sediment
337
413
+
Arg
TCG
[ENA]
¢þ
>WENV183513513
OMKS01005580
[OMKS] sediment metagenome; hot spring sediment
8548
8473
-
Arg
TCG
[ENA]
¢þ
>WENV183514694
OMKS01028152
[OMKS] sediment metagenome; hot spring sediment
270
345
+
Arg
TCG
[ENA]
¢þ
>WENV170017883
BARU01036979
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
155
80
-
Arg
TCG
[ENA]
¢þ
>WENV170018213
BARV01025848
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
465
540
+
Arg
TCG
[ENA]
¢þ
>SRA1026067
SRR035085.135785
454 Sequencing (SRP001806)
144
69
-
Arg
TCG
[SRA]
>C161033433
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
3285117
3285191
+
Arg
TCG
-
¡û
>W1610662541
LJTR01000233
Planctomycetota
Phycisphaerae bacterium SG8_4 [LJTR]
3471
3396
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK