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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146624 (32 seq.)
>W1710794406
LJQD01000054
Gammaproteobacteria
Pseudomonas syringae pv. castaneae [LJQD]
5620
5696
+
Met
CAT
[ENA]
¡û
>W1711115379
LUAD01000026
Gammaproteobacteria
Morganella sp. HMSC11D09 [LUAD]
48264
48340
+
Met
CAT
[ENA]
¡û
>W1711115416
LUAD01000160
Gammaproteobacteria
Morganella sp. HMSC11D09 [LUAD]
26278
26202
-
Met
CAT
[ENA]
¡û
>W1711156042
LVOT01000074
Gammaproteobacteria
Escherichia coli [LVOT]
45914
45838
-
Met
CAT
[ENA]
¡û
>WENV180355666
OBNI01016570
[OBNI] sediment metagenome; sediment
180
256
+
fMet
CAT
[ENA]
¢þ
>WENV182807874
OJWA01000042
[OJWA] human gut metagenome; human gut
33055
32979
-
fMet
CAT
[ENA]
¢þ
>ENV08001583
ABNJ01040109
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
28
104
+
Met
CAT
[ENA]
¡û
>ENV08001602
ABNJ01071955
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
28
104
+
Met
CAT
[ENA]
¡û
>WENV170268484
CERG01090307
[CERG] marine metagenome genome assembly TARA_068_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
364
440
+
Met
CAT
[ENA]
¢þ
>WENV170288068
CERX01064519
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14315
14391
+
Met
CAT
[ENA]
¢þ
>C181142994
CP026845
Gammaproteobacteria
Shigella boydii NCTC 9733 [CP026845]
3536754
3536830
+
Met
CAT
-
¡û
>C181168542
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
861219
861295
+
Met
CAT
-
¡û
>W1911224607
NRVL01000064
Gammaproteobacteria
Escherichia coli A32 [NRVL]
44734
44810
+
Met
CAT
[ENA]
¡û
>W1810276516
PSSR01000003
Gammaproteobacteria
Shigella boydii ATCC 35965 [PSSR]
39006
39082
+
Met
CAT
[ENA]
¡û
>W11161254
AFGE01000056
Gammaproteobacteria
Shigella genomosp. SF-2015 5216-82 [AFGE]
16622
16698
+
Met
CAT
[ENA]
¡û
>W11178020
AGCS01000007
Gammaproteobacteria
Pseudomonas putida B6-2 [AGCS]
37715
37639
-
Met
CAT
[ENA]
¡û
>C161017670
CP007638
Gammaproteobacteria
Pseudomonas sp. WCS374 [CP007638]
4895474
4895550
+
Met
CAT
[Ensembl]
¡û
>C161078756
CP014867
Gammaproteobacteria
Pseudomonas chlororaphis [CP014867]
1558702
1558778
+
Met
CAT
-
¡û
>C161084503
CP015202
Gammaproteobacteria
Pseudomonas putida B6-2 [CP015202]
2435218
2435294
+
Met
CAT
[Ensembl]
¡û
>W1610658363
LJQD01000054
Gammaproteobacteria
Pseudomonas syringae pv. castaneae [LJQD]
5620
5696
+
Met
CAT
[ENA]
¡û
>W1610658581
LJQI01000333
Gammaproteobacteria
Pseudomonas amygdali pv. eriobotryae [LJQI]
28731
28655
-
Met
CAT
[ENA]
¡û
>W1610658897
LJQQ01000002
Gammaproteobacteria
Pseudomonas syringae pv. lapsa [LJQQ]
75897
75973
+
Met
CAT
[ENA]
¡û
>W1610658898
LJQQ01000002
Gammaproteobacteria
Pseudomonas syringae pv. lapsa [LJQQ]
76276
76352
+
Met
CAT
[ENA]
¡û
>W1610659126
LJQV01000193
Gammaproteobacteria
Pseudomonas amygdali pv. myricae [LJQV]
29202
29278
+
Met
CAT
[ENA]
¡û
>W1610659127
LJQV01000193
Gammaproteobacteria
Pseudomonas amygdali pv. myricae [LJQV]
29510
29586
+
Met
CAT
[ENA]
¡û
>W1610659497
LJRC01000271
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. primulae [LJRC]
30485
30409
-
Met
CAT
[ENA]
¡û
>W1610659498
LJRC01000271
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. primulae [LJRC]
30212
30136
-
Met
CAT
[ENA]
¡û
>W1610769572
LNRF01000004
Gammaproteobacteria
Vibrio splendidus [LNRF]
213167
213091
-
Met
CAT
[ENA]
¡û
>W1610769591
LNRF01000009
Gammaproteobacteria
Vibrio splendidus [LNRF]
233
157
-
Met
CAT
[ENA]
¡û
>W1610769623
LNRF01000018
Gammaproteobacteria
Vibrio splendidus [LNRF]
40
116
+
Met
CAT
[ENA]
¡û
>W1610966582
LVOT01000074
Gammaproteobacteria
Escherichia coli [LVOT]
45914
45838
-
Met
CAT
[ENA]
¡û
>W1710581439
FPKC01000027
Gammaproteobacteria
Pseudomonas sp. NFACC47-1 [FPKC]
73
-1
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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