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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147398 (52 seq.)
>A171000446
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
2504675
2504748
+
Val
TAC
-
¡û
>A171001111
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
467720
467793
+
Val
TAC
-
¡û
>A171003069
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3323888
3323814
-
Val
TAC
-
¡û
>A171003172
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
3679976
3679902
-
Val
TAC
-
¡û
>A171006976
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2443545
2443472
-
Val
TAC
-
¡û
>A171006997
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1294848
1294921
+
Val
TAC
-
¡û
>WENV180318281
OBKM01000273
[OBKM] metagenome; water
17642
17568
-
Val
TAC
[ENA]
¢þ
>WENV180318299
OBKM01000336
[OBKM] metagenome; water
21981
21908
-
Val
TAC
[ENA]
¢þ
>WENV180318600
OBKM01002629
[OBKM] metagenome; water
1371
1444
+
Val
TAC
[ENA]
¢þ
>WENV180318601
OBKM01002631
[OBKM] metagenome; water
5484
5557
+
Val
TAC
[ENA]
¢þ
>WENV170680552
LFCJ01014658
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
4477
4404
-
Val
TAC
[ENA]
¢þ
>WENV170681562
LFFM01001432
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
53
126
+
Val
TAC
[ENA]
¢þ
>WENV170682149
LFFM01006573
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
4153
4079
-
Val
TAC
[ENA]
¢þ
>WENV170703127
LKMJ01006866
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6453
6527
+
Val
TAC
[ENA]
¢þ
>W1910226698
FMZP01000011
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
67931
68005
+
Val
TAC
[ENA]
¡û
>W1910229383
FNWU01000010
Euryarchaeota
Halopenitus malekzadehii IBRC-M10418 [FNWU]
6027
5953
-
Val
TAC
[ENA]
¡û
>W1910229939
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
915004
914930
-
Val
TAC
[ENA]
¡û
>W1910230394
FOPZ01000003
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
75702
75775
+
Val
TAC
[ENA]
¡û
>W1910568498
JDTG01000006
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
185557
185483
-
Val
TAC
[ENA]
¡û
>W1910569086
JHUT02000014
Euryarchaeota
Natrinema mahii H13 [JHUT]
19454
19528
+
Val
TAC
[ENA]
¡û
>W1910575002
JQKV01000002
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
769752
769679
-
Val
TAC
[ENA]
¡û
>W1910749482
MJCD01000003
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
57125
57198
+
Val
TAC
[ENA]
¡û
>W1910752247
MKFG01000003
Euryarchaeota
Halorubrum lacusprofundi DL18 [MKFG]
57069
57142
+
Val
TAC
[ENA]
¡û
>W1910911719
NHOA01000004
Euryarchaeota
Halorubrum persicum C49 [NHOA]
10379
10453
+
Val
TAC
[ENA]
¡û
>W1910911940
NHOV01000574
Euryarchaeota
Halorubrum ezzemoulense LG1 [NHOV]
59712
59785
+
Val
TAC
[ENA]
¡û
>W1910912249
NHPC01000027
Euryarchaeota
Halorubrum ezzemoulense Fb21 [NHPC]
46850
46923
+
Val
TAC
[ENA]
¡û
>W1910912330
NHPE01000131
Euryarchaeota
Halorubrum sp. Eb13 [NHPE]
21312
21386
+
Val
TAC
[ENA]
¡û
>W1910912355
NHPF01000076
Euryarchaeota
Halorubrum sp. Ea8 [NHPF]
12373
12447
+
Val
TAC
[ENA]
¡û
>W1911434004
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1880277
1880203
-
Val
TAC
[ENA]
¡û
>W1911709782
QPLU01000002
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
199135
199208
+
Val
TAC
[ENA]
¡û
>W1911709834
QPLV01000003
Euryarchaeota
Halorubrum sp. Atlit-8R [QPLV]
244219
244292
+
Val
TAC
[ENA]
¡û
>W1911709964
QPND01000002
Euryarchaeota
Saliphagus sp. LR7 [QPND]
102322
102395
+
Val
TAC
[ENA]
¡û
>W1610000498
ABEB01000001
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [ABEB]
174955
174882
-
Val
TAC
[ENA]
¡û
>W1610004124
AGIN01000003
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
15666
15740
+
Val
TAC
[ENA]
¡û
>W1610005374
AJVG01000008
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
148394
148318
-
Val
TAC
[ENA]
¡û
>W1610005940
ALWQ01000004
Euryarchaeota
Halorubrum sp. T3 [ALWQ]
261263
261190
-
Val
TAC
[ENA]
¡û
>W1610011947
AOHX01000028
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
11264
11340
+
Val
TAC
[ENA]
¡û
>W1610012037
AOHZ01000043
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
49845
49772
-
Val
TAC
[ENA]
¡û
>W1610012261
AOIE01000101
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
104335
104261
-
Val
TAC
[ENA]
¡û
>W1610012434
AOIL01000048
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
109858
109785
-
Val
TAC
[ENA]
¡û
>W1610012752
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
136020
136093
+
Val
TAC
[ENA]
¡û
>W1610012904
AOIW01000054
Euryarchaeota
Halorubrum terrestre JCM 10247 [AOIW]
142088
142161
+
Val
TAC
[ENA]
¡û
>W1610012991
AOJE01000021
Euryarchaeota
Halorubrum saccharovorum DSM 1137 [AOJE]
4852
4926
+
Val
TAC
[ENA]
¡û
>W1610013093
AOJG01000041
Euryarchaeota
Halorubrum lipolyticum DSM 21995 [AOJG]
57674
57747
+
Val
TAC
[ENA]
¡û
>W1610013106
AOJH01000027
Euryarchaeota
Halorubrum kocurii JCM 14978 [AOJH]
8474
8400
-
Val
TAC
[ENA]
¡û
>W1610013242
AOJK01000015
Euryarchaeota
Halorubrum californiense DSM 19288 [AOJK]
26386
26312
-
Val
TAC
[ENA]
¡û
>W1610013437
AOJO01000046
Euryarchaeota
Halorubrum hochstenium ATCC 700873 [AOJO]
73221
73294
+
Val
TAC
[ENA]
¡û
>W1610024334
ATXS01000012
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
43373
43446
+
Val
TAC
[ENA]
¡û
>W1610083037
CBMB010000009
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
86249
86322
+
Val
TAC
[ENA]
¡û
>W1610675796
LKIR01000135
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
26322
26248
-
Val
TAC
[ENA]
¡û
>W1610682356
LKMU01000040
Euryarchaeota
Halorubrum sp. PL-Br10_E2g5 [LKMU]
6453
6527
+
Val
TAC
[ENA]
¡û
>W1610682427
LKMY01000040
Euryarchaeota
Nanohaloarchaea archaeon PL-Br10_U2g5 [LKMY]
6453
6527
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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