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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147434 (36 seq.)
>A171002648
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
229014
228941
-
Lys
TTT
-
¡û
>A171003756
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
990907
990834
-
Lys
TTT
-
¡û
>A171003981
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
241415
241342
-
Lys
TTT
-
¡û
>A171004428
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
232063
231989
-
Lys
TTT
-
¡û
>A171005817
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
1836959
1836886
-
Lys
TTT
-
¡û
>A171006186
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
232064
231990
-
Lys
TTT
-
¡û
>A179000681
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2030031
2029920
-
Lys
TTT
-
¡û
>A17A001572
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2030031
2029920
-
Lys
TTT
-
¡û
>WENV180318321
OBKM01000396
[OBKM] metagenome; water
14603
14529
-
Lys
TTT
[ENA]
¢þ
>WENV180318635
OBKM01003295
[OBKM] metagenome; water
3416
3489
+
Lys
TTT
[ENA]
¢þ
>At0790
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
2650861
2650788
-
Lys
TTT
[Ensembl]
¡û
>WENV170702343
LKMJ01001407
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
20614
20689
+
Lys
TTT
[ENA]
¢þ
>WENV170702344
LKMJ01001423
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2571
2496
-
Lys
TTT
[ENA]
¢þ
>WENV170703842
LKMJ01017309
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1985
2058
+
Lys
TTT
[ENA]
¢þ
>W1910175090
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
1393719
1393792
+
Lys
TTT
[ENA]
¡û
>W1910228350
FNOF01000001
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
11883
11809
-
Lys
TTT
[ENA]
¡û
>W1910583060
JXAO01000041
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
16618
16691
+
Lys
TTT
[ENA]
¡û
>W1910617580
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
588301
588375
+
Lys
TTT
[ENA]
¡û
>W1911493159
OBEJ01000002
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
117422
117348
-
Lys
TTT
[ENA]
¡û
>W1911580790
PEND01000001
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
64897
64970
+
Lys
TTT
[ENA]
¡û
>W1911682221
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
2593289
2593216
-
Lys
TTT
[ENA]
¡û
>W1911709470
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
12177
12104
-
Lys
TTT
[ENA]
¡û
>W1911709601
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
878865
878938
+
Lys
TTT
[ENA]
¡û
>W1911717783
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
51060
51133
+
Lys
TTT
[ENA]
¡û
>W1911749419
QWGG01000006
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
38800
38727
-
Lys
TTT
[ENA]
¡û
>W1911770061
QXIK01000024
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
20909
20982
+
Lys
TTT
[ENA]
¡û
>W1610014159
AOLQ01000069
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
11790
11716
-
Lys
TTT
[ENA]
¡û
>W1610014200
AOLR01000023
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
229786
229859
+
Lys
TTT
[ENA]
¡û
>W1610014233
AOLS01000067
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
108070
108143
+
Lys
TTT
[ENA]
¡û
>W1610014282
AOLW01000024
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
267676
267749
+
Lys
TTT
[ENA]
¡û
>W1610014323
AOLX01000018
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
9861
9934
+
Lys
TTT
[ENA]
¡û
>W1610014399
AOLY01000039
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
407275
407348
+
Lys
TTT
[ENA]
¡û
>W1610061912
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
2555308
2555235
-
Lys
TTT
[ENA]
¡û
>W1610061933
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
338287
338360
+
Lys
TTT
[ENA]
¡û
>W1610799800
LOPU01000029
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
54698
54771
+
Lys
TTT
[ENA]
¡û
>W1610881013
LRHL01000004
Euryarchaeota
Haloarcula sp. K1 [LRHL]
10779
10706
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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