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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147788 (15 seq.)
>A171000266
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
1130779
1130855
+
Val
TAC
-
¡û
>A171001553
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1336138
1336062
-
Val
TAC
-
¡û
>A171001554
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1336000
1335924
-
Val
TAC
-
¡û
>A171002511
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1515284
1515208
-
Val
TAC
-
¡û
>WENV180332339
OBLD01000219
[OBLD] metagenome; water
2393
2468
+
Val
TAC
[ENA]
¢þ
>WENV181206187
OFAT01000128
[OFAT] metagenome; hydrothermal vent
6507
6582
+
Val
TAC
[ENA]
¢þ
>WENV181206572
OFAW01000189
[OFAW] metagenome; hydrothermal vent
7259
7334
+
Val
TAC
[ENA]
¢þ
>At1046
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
97098
97174
+
Val
TAC
[Ensembl]
¡û
>At1106
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
699739
699663
-
Val
TAC
[Ensembl]
¡û
>At1148
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1431129
1431053
-
Val
TAC
[Ensembl]
¡û
>W1610000345
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
28551
28475
-
Val
TAC
[ENA]
¡û
>W1610000454
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
288971
289047
+
Val
TAC
[ENA]
¡û
>W1610000561
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
231551
231627
+
Val
TAC
[ENA]
¡û
>W1610000590
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
238607
238683
+
Val
TAC
[ENA]
¡û
>W1610000591
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
238745
238821
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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