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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147808 (17 seq.)
>A171004367
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
3427839
3427763
-
Lys
TTT
-
¡û
>A171004725
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
1004744
1004820
+
Lys
TTT
-
¡û
>A171005516
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1269382
1269458
+
Lys
TTT
-
¡û
>A171005566
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
1159078
1159154
+
Lys
TTT
-
¡û
>A171005651
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
1960648
1960572
-
Lys
TTT
-
¡û
>WENV180345483
OBLN01000274
[OBLN] sediment metagenome; sediment
78
2
-
Lys
TTT
[ENA]
¢þ
>At1495
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
4759576
4759500
-
Lys
TTT
[Ensembl]
¡û
>W1910230878
FPAO01000002
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
217927
217851
-
Lys
TTT
[ENA]
¡û
>W1910570708
JJPU01000044
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
52376
52300
-
Lys
TTT
[ENA]
¡û
>W1910571260
JJQF01000034
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
123367
123291
-
Lys
TTT
[ENA]
¡û
>W1910572073
JJQU01000098
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
23647
23571
-
Lys
TTT
[ENA]
¡û
>W1910635246
LMVP01000112
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
17731
17655
-
Lys
TTT
[ENA]
¡û
>W1910655374
LZPK01000027
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
43064
42988
-
Lys
TTT
[ENA]
¡û
>W1610000009
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
315475
315399
-
Lys
TTT
[ENA]
¡û
>W1610046911
BBCW01000050
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
5897
5973
+
Lys
TTT
[ENA]
¡û
>W1610048600
BBEF01000024
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
42845
42769
-
Lys
TTT
[ENA]
¡û
>W1610919890
LSRV01000002
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
75492
75568
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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