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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147814 (40 seq.)
>A171007179
HE964772
Euryarchaeota
Methanoculleus bourgensis MS2 MS2T [HE964772]
170124
170197
+
Lys
TTT
-
¡û
>A171007538
LT158599
Euryarchaeota
Methanoculleus bourgensis [LT158599]
173176
173249
+
Lys
TTT
-
¡û
>A171007604
LT549891
Euryarchaeota
Methanoculleus bourgensis [LT549891]
219166
219239
+
Lys
TTT
-
¡û
>WENV180094574
MTBK01016119
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
17953
18026
+
Lys
TTT
[ENA]
¢þ
>WENV180096026
MTBK01103996
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
11093
11166
+
Lys
TTT
[ENA]
¢þ
>WENV180096815
MTBK01150150
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
134
61
-
Lys
TTT
[ENA]
¢þ
>WENV181230569
OFEK01001609
[OFEK] activated sludge metagenome; Anaerobic digester
9090
9017
-
Lys
TTT
[ENA]
¢þ
>WENV181230661
OFEK01002209
[OFEK] activated sludge metagenome; Anaerobic digester
6726
6799
+
Lys
TTT
[ENA]
¢þ
>WENV181230728
OFEK01002739
[OFEK] activated sludge metagenome; Anaerobic digester
6834
6907
+
Lys
TTT
[ENA]
¢þ
>WENV181231039
OFEK01008413
[OFEK] activated sludge metagenome; Anaerobic digester
1283
1356
+
Lys
TTT
[ENA]
¢þ
>At1245
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
273652
273725
+
Lys
TTT
[Ensembl]
¡û
>At1246
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
289372
289445
+
Lys
TTT
[Ensembl]
¡û
>WENV170562333
CZCB01002232
[CZCB] anaerobic digester metagenome; anaerobic digester
71167
71240
+
Lys
TTT
[ENA]
¢þ
>WENV170562375
CZCB01002339
[CZCB] anaerobic digester metagenome; anaerobic digester
9749
9822
+
Lys
TTT
[ENA]
¢þ
>WENV170670470
LAHT01015741
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
3
76
+
Lys
TTT
[ENA]
¢þ
>WENV170677279
LDZT01004668
[LDZT] terrestrial metagenome; oil reservoir sample SB1
21275
21348
+
Lys
TTT
[ENA]
¢þ
>WENV170677588
LDZT01007173
[LDZT] terrestrial metagenome; oil reservoir sample SB1
96
23
-
Lys
TTT
[ENA]
¢þ
>WENV170678699
LDZU01003937
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1851
1778
-
Lys
TTT
[ENA]
¢þ
>WENV170688624
LFRM01253971
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
51978
51905
-
Lys
TTT
[ENA]
¢þ
>WENV170689536
LFRM01299509
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10618
10691
+
Lys
TTT
[ENA]
¢þ
>WENV170715273
LNQE01001213
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
9729
9656
-
Lys
TTT
[ENA]
¢þ
>WENV170716536
LSQX01002627
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
521
594
+
Lys
TTT
[ENA]
¢þ
>WENV170716605
LSQX01005169
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
41360
41433
+
Lys
TTT
[ENA]
¢þ
>WENV170723413
LSQX01267450
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
534
607
+
Lys
TTT
[ENA]
¢þ
>WENV170726913
LSQX01398651
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
29803
29876
+
Lys
TTT
[ENA]
¢þ
>WENV170968250
MTKW01007474
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4522
4595
+
Lys
TTT
[ENA]
¢þ
>W1910211675
FMID01000029
Euryarchaeota
Methanoculleus chikugoensis [FMID]
32294
32367
+
Lys
TTT
[ENA]
¡û
>W1910226979
FNFT01000009
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
45795
45868
+
Lys
TTT
[ENA]
¡û
>W1910572503
JMIO01000002
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
1950
2023
+
Lys
TTT
[ENA]
¡û
>W1910572548
JMIO01000244
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
229
302
+
Lys
TTT
[ENA]
¡û
>W1910583794
JXOJ01000001
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
97172
97245
+
Lys
TTT
[ENA]
¡û
>W1910617150
LHQS01000001
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
414990
415063
+
Lys
TTT
[ENA]
¡û
>W1910783544
MPOY01000528
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
3472
3399
-
Lys
TTT
[ENA]
¡û
>W1610000253
AASI01000002
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
31808
31881
+
Lys
TTT
[ENA]
¡û
>W1610063044
BCNX01000012
Euryarchaeota
Methanoculleus thermophilus CR-1 [BCNX]
47631
47558
-
Lys
TTT
[ENA]
¡û
>W1610063080
BCNY01000015
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
610508
610581
+
Lys
TTT
[ENA]
¡û
>W1610605025
LFRN01000178
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
51978
51905
-
Lys
TTT
[ENA]
¡û
>W1610605071
LFRO01000078
Euryarchaeota
Methanoculleus sp. DTU007 [LFRO]
10618
10691
+
Lys
TTT
[ENA]
¡û
>W1610613830
LGGJ01000211
Euryarchaeota
Methanocalculus sp. 52_23 [LGGJ]
96
23
-
Lys
TTT
[ENA]
¡û
>W1610946072
LUYK01000038
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
8665
8592
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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