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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153060 (69 seq.)
>W1711029048
LRES01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
291688
291764
+
Arg
TCT
[ENA]
¡û
>W1711228136
LXWI01000015
Campylobacterota
Helicobacter pullorum [LXWI]
5546
5470
-
Arg
TCT
[ENA]
¡û
>W1711307704
MAPD01000044
Campylobacterota
Helicobacter pullorum [MAPD]
5559
5483
-
Arg
TCT
[ENA]
¡û
>W1711463591
MJJG01000006
Campylobacterota
Campylobacter lanienae [MJJG]
13996
13920
-
Arg
TCT
[ENA]
¡û
>W1711463642
MJJH01000009
Campylobacterota
Campylobacter lanienae [MJJH]
35443
35519
+
Arg
TCT
[ENA]
¡û
>W1711463865
MJJN01000011
Campylobacterota
Campylobacter lanienae [MJJN]
33418
33494
+
Arg
TCT
[ENA]
¡û
>W1711464120
MJJU01000023
Campylobacterota
Campylobacter lanienae [MJJU]
10926
11002
+
Arg
TCT
[ENA]
¡û
>W1711464420
MJKC01000012
Campylobacterota
Campylobacter sp. P0087 [MJKC]
49026
49102
+
Arg
TCT
[ENA]
¡û
>W1711464566
MJKG01000002
Campylobacterota
Campylobacter sp. P0103 [MJKG]
115339
115263
-
Arg
TCT
[ENA]
¡û
>W1711464606
MJKH01000005
Campylobacterota
Campylobacter sp. P0106 [MJKH]
8449
8373
-
Arg
TCT
[ENA]
¡û
>W1711465023
MJKS01000002
Campylobacterota
Campylobacter sp. P0140 [MJKS]
161967
162043
+
Arg
TCT
[ENA]
¡û
>W1711465483
MJLE01000004
Campylobacterota
Campylobacter sp. P157 [MJLE]
162466
162542
+
Arg
TCT
[ENA]
¡û
>W1711476689
MJVW01000025
Campylobacterota
Campylobacter lari [MJVW]
1188
1112
-
Arg
TCT
[ENA]
¡û
>W1711477315
MJWK01000021
Campylobacterota
Campylobacter lari [MJWK]
7567
7491
-
Arg
TCT
[ENA]
¡û
>W131196567
ASTK01000097
Campylobacterota
Campylobacter fetus subsp. venerealis bv. intermedius str. 99541 [ASTK]
18694
18770
+
Arg
TCT
[ENA]
¡û
>C171083853
CP018788
Campylobacterota
Campylobacter lanienae NCTC 13003 [CP018788]
64047
64123
+
Arg
TCT
-
¡û
>C010556
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
202750
202826
+
Arg
TCT
[Ensembl]
¡û
>WENV180042501
LQAF01000489
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
3925
4000
+
Arg
TCT
[ENA]
¢þ
>W08010282
ABQS01000009
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
19877
19804
-
Arg
TCT
[ENA]
¡û
>WENV180948144
ODUG01000327
[ODUG] human metagenome; G_DNA_Tongue dorsum
8164
8240
+
Arg
TCT
[ENA]
¢þ
>WENV181057292
ODYL01000019
[ODYL] human metagenome; G_DNA_Tongue dorsum
103453
103529
+
Arg
TCT
[ENA]
¢þ
>WENV181120018
OEFJ01001828
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
4035
4111
+
Arg
TCT
[ENA]
¢þ
>WENV181537833
OGHX01004984
[OGHX] metagenome; Human gut stool
705
781
+
Arg
TCT
[ENA]
¢þ
>WENV183613084
OODU01001796
[OODU] human gut metagenome; human gut
12699
12775
+
Arg
TCT
[ENA]
¢þ
>C191002338
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
631899
631823
-
Arg
TCT
-
¡û
>C191003931
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
628161
628085
-
Arg
TCT
-
¡û
>C191177891
CP040464
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S12 [CP040464]
1635783
1635707
-
Arg
TCT
-
¡û
>C191213266
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
302890
302814
-
Arg
TCT
-
¡û
>C191214544
LR134534
Campylobacterota
Campylobacter insulaenigrae NCTC12928 [LR134534]
76343
76267
-
Arg
TCT
-
¡û
>W1910546146
FZMI01000042
Campylobacterota
Helicobacter cinaedi [FZMI]
2492
2568
+
Arg
TCT
[ENA]
¡û
>W1910546499
FZMS01000048
Campylobacterota
Helicobacter bilis [FZMS]
583
659
+
Arg
TCT
[ENA]
¡û
>W1910546868
FZNF01000029
Campylobacterota
Helicobacter trogontum [FZNF]
63616
63540
-
Arg
TCT
[ENA]
¡û
>W1910574028
JPPC01000011
Campylobacterota
Campylobacter fetus subsp. venerealis TD [JPPC]
18668
18744
+
Arg
TCT
[ENA]
¡û
>W1910914934
NHYK01000007
Campylobacterota
Helicobacter sp. 10-6591 [NHYK]
77192
77116
-
Arg
TCT
[ENA]
¡û
>W1910915036
NHYN01000005
Campylobacterota
Helicobacter sp. 15-1451 [NHYN]
21382
21458
+
Arg
TCT
[ENA]
¡û
>W1910928094
NIQH01000002
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1547c [NIQH]
83493
83569
+
Arg
TCT
[ENA]
¡û
>W1910928197
NIQJ01000007
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1563d [NIQJ]
62164
62240
+
Arg
TCT
[ENA]
¡û
>W1910928253
NIQL01000001
Campylobacterota
Campylobacter hyointestinalis subsp. hyointestinalis S1592a [NIQL]
197981
197905
-
Arg
TCT
[ENA]
¡û
>W1911200177
NREN01000008
Campylobacterota
Campylobacter sp. P255 [NREN]
73124
73200
+
Arg
TCT
[ENA]
¡û
>W1810002691
BEYZ01000008
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
1499
1423
-
Arg
TCT
[ENA]
¡û
>W1810002867
BEZE01000302
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
5923
5999
+
Arg
TCT
[ENA]
¡û
>W1810002966
BEZH01000098
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
1499
1423
-
Arg
TCT
[ENA]
¡û
>W1810003022
BEZJ01000066
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
2205
2281
+
Arg
TCT
[ENA]
¡û
>W1810003084
BEZK01000129
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
2245
2321
+
Arg
TCT
[ENA]
¡û
>W1810003159
BEZN01000005
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
2204
2280
+
Arg
TCT
[ENA]
¡û
>W1810003228
BEZO01000216
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
2206
2282
+
Arg
TCT
[ENA]
¡û
>W1810010705
BGKD01000198
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
1495
1419
-
Arg
TCT
[ENA]
¡û
>W1810010732
BGKE01000140
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
3814
3738
-
Arg
TCT
[ENA]
¡û
>W1810010843
BGKH01000052
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
5931
6007
+
Arg
TCT
[ENA]
¡û
>W1810046586
NXLR01000003
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
45000
45076
+
Arg
TCT
[ENA]
¡û
>W1810698451
QMAE01000017
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii CHY5 [QMAE]
17167
17243
+
Arg
TCT
[ENA]
¡û
>W1810698640
QMAJ01000005
Campylobacterota
Campylobacter hyointestinalis subsp. lawsonii RM10071 [QMAJ]
40564
40488
-
Arg
TCT
[ENA]
¡û
>SRA1039983
SRR035091.9658
454 Sequencing (SRP001812)
202
129
-
Arg
TCT
[SRA]
>W1511353234
JRPB01000012
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
12220
12296
+
Arg
TCT
[ENA]
¡û
>W1511353438
JRPH01000001
Campylobacterota
Helicobacter bilis Missouri [JRPH]
1072603
1072679
+
Arg
TCT
[ENA]
¡û
>W1511353464
JRPI01000001
Campylobacterota
Helicobacter bilis ATCC 49314 [JRPI]
754589
754513
-
Arg
TCT
[ENA]
¡û
>W1511353495
JRPJ01000001
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
162625
162701
+
Arg
TCT
[ENA]
¡û
>C161081198
CP014991
Campylobacterota
Helicobacter himalayensis YS1 [CP014991]
907737
907661
-
Arg
TCT
-
¡û
>W1610164505
FAVC01000002
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
245872
245948
+
Arg
TCT
[ENA]
¡û
>W1610599494
LFLM01000017
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
18292
18368
+
Arg
TCT
[ENA]
¡û
>W1610599664
LFLQ01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
33416
33340
-
Arg
TCT
[ENA]
¡û
>W1610609322
LFXF01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
35260
35184
-
Arg
TCT
[ENA]
¡û
>W1610877204
LRES01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
291688
291764
+
Arg
TCT
[ENA]
¡û
>W1611012053
LXWI01000015
Campylobacterota
Helicobacter pullorum [LXWI]
5546
5470
-
Arg
TCT
[ENA]
¡û
>W1611055987
MAPD01000044
Campylobacterota
Helicobacter pullorum [MAPD]
5559
5483
-
Arg
TCT
[ENA]
¡û
>W1710166172
FAVC01000002
Campylobacterota
Campylobacter hyointestinalis subsp. fetus [FAVC]
245872
245948
+
Arg
TCT
[ENA]
¡û
>W1710720899
LFLM01000017
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
18292
18368
+
Arg
TCT
[ENA]
¡û
>W1710721069
LFLQ01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
33416
33340
-
Arg
TCT
[ENA]
¡û
>W1710730609
LFXF01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
35260
35184
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK