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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154766 (110 seq.)
>C171064271
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2612129
2612205
+
Asp
GTC
-
¡û
>C171064341
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702099
702023
-
Asp
GTC
-
¡û
>C171109218
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417955
1418031
+
Asp
GTC
-
¡û
>C171109283
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4094651
4094575
-
Asp
GTC
-
¡û
>W131230184
AUHK01000003
Bacillota
Helcococcus sueciensis DSM 17243 [AUHK]
43420
43344
-
Asp
GTC
[ENA]
¡û
>WENV180118768
OASD01000820
[OASD] human gut metagenome; ENVO:feces
10436
10360
-
Asp
GTC
[ENA]
¢þ
>WENV180119436
OASD01091541
[OASD] human gut metagenome; ENVO:feces
134
58
-
Asp
GTC
[ENA]
¢þ
>WENV180172549
OAVX01006486
[OAVX] human gut metagenome; faeces
1021
1097
+
Asp
GTC
[ENA]
¢þ
>WENV180226816
OBBS01004439
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
251
175
-
Asp
GTC
[ENA]
¢þ
>WENV180227071
OBBT01010086
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
43
119
+
Asp
GTC
[ENA]
¢þ
>WENV180241389
OBDG01000773
[OBDG] human gut metagenome; human gut
1435
1511
+
Asp
GTC
[ENA]
¢þ
>WENV180312907
OBJZ01001849
[OBJZ] human gut metagenome; fecal sample
995
1071
+
Asp
GTC
[ENA]
¢þ
>WENV180402520
OBRP01003930
[OBRP] human gut metagenome; ENVO:feces
201
277
+
Asp
GTC
[ENA]
¢þ
>WENV180402688
OBRQ01008410
[OBRQ] human gut metagenome; ENVO:feces
142
218
+
Asp
GTC
[ENA]
¢þ
>WENV180403486
OBRT01000829
[OBRT] human gut metagenome; ENVO:feces
5865
5789
-
Asp
GTC
[ENA]
¢þ
>WENV180403526
OBRT01001395
[OBRT] human gut metagenome; ENVO:feces
192
268
+
Asp
GTC
[ENA]
¢þ
>WENV180405530
OBTM01024045
[OBTM] human gut metagenome; ENVO:feces
103
27
-
Asp
GTC
[ENA]
¢þ
>WENV180444383
OBWZ01003228
[OBWZ] human gut metagenome; faeces
1360
1436
+
Asp
GTC
[ENA]
¢þ
>WENV180556597
OCJS01007999
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
226
150
-
Asp
GTC
[ENA]
¢þ
>WENV180559546
OCKC01003998
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
23
99
+
Asp
GTC
[ENA]
¢þ
>WENV180597015
OCPK01000334
[OCPK] human gut metagenome; ENVO:feces
9013
9089
+
Asp
GTC
[ENA]
¢þ
>WENV180597586
OCPL01007673
[OCPL] human gut metagenome; ENVO:feces
998
1074
+
Asp
GTC
[ENA]
¢þ
>WENV180967067
ODUS01016022
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
241
317
+
Asp
GTC
[ENA]
¢þ
>WENV181010206
ODWG01011765
[ODWG] human metagenome; G_DNA_Anterior nares
125
201
+
Asp
GTC
[ENA]
¢þ
>WENV181328042
OFLS01000103
[OFLS] metagenome; faeces
52332
52256
-
Asp
GTC
[ENA]
¢þ
>WENV181800820
OGRZ01000026
[OGRZ] human gut metagenome; fecal sample 1 from infant 2
976
1052
+
Asp
GTC
[ENA]
¢þ
>WENV181804038
OGSE01000136
[OGSE] human gut metagenome; fecal sample 3 from infant 2
1261
1337
+
Asp
GTC
[ENA]
¢þ
>WENV181805766
OGSJ01000448
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
1339
1415
+
Asp
GTC
[ENA]
¢þ
>WENV181806444
OGSK01006427
[OGSK] human gut metagenome; fecal sample 2 from infant 5
317
393
+
Asp
GTC
[ENA]
¢þ
>WENV181806769
OGSL01006272
[OGSL] human gut metagenome; fecal sample 6 from infant 5
268
192
-
Asp
GTC
[ENA]
¢þ
>WENV181807197
OGSN01010816
[OGSN] human gut metagenome; fecal sample 7 from infant 8
100
176
+
Asp
GTC
[ENA]
¢þ
>WENV181815347
OGTK01000014
[OGTK] human gut metagenome; fecal sample 2 from infant 2
1073
1149
+
Asp
GTC
[ENA]
¢þ
>WENV181821363
OGUE01000916
[OGUE] human gut metagenome; fecal sample 1 from infant 5
3376
3300
-
Asp
GTC
[ENA]
¢þ
>WENV182406077
OIEX01000278
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
26648
26572
-
Asp
GTC
[ENA]
¢þ
>WENV182407591
OIFD01000133
[OIFD] human gut metagenome; stool
38215
38139
-
Asp
GTC
[ENA]
¢þ
>WENV182408741
OIFF01002537
[OIFF] human gut metagenome; stool
487
411
-
Asp
GTC
[ENA]
¢þ
>WENV182411974
OIFQ01004049
[OIFQ] human gut metagenome; stool
261
185
-
Asp
GTC
[ENA]
¢þ
>WENV182629467
OJKS01006556
[OJKS] metagenome; surface
829
905
+
Asp
GTC
[ENA]
¢þ
>WENV182644084
OJLW01007420
[OJLW] metagenome; surface
747
823
+
Asp
GTC
[ENA]
¢þ
>WENV182646451
OJMA01053435
[OJMA] metagenome; surface
315
391
+
Asp
GTC
[ENA]
¢þ
>WENV182646661
OJMC01002909
[OJMC] metagenome; surface
1344
1268
-
Asp
GTC
[ENA]
¢þ
>WENV182671893
OJNM01008156
[OJNM] metagenome; surface
295
371
+
Asp
GTC
[ENA]
¢þ
>C08004927
AP008971
Bacillota
Finegoldia magna ATCC 29328 [AP008971]
203747
203823
+
Asp
GTC
[Ensembl]
¡û
>C08004940
AP008971
Bacillota
Finegoldia magna ATCC 29328 [AP008971]
617505
617581
+
Asp
GTC
[Ensembl]
¡û
>WENV182811129
OJXI01001030
[OJXI] human gut metagenome; human gut
198
122
-
Asp
GTC
[ENA]
¢þ
>WENV182819239
OKAA01006628
[OKAA] human gut metagenome; human gut
135
59
-
Asp
GTC
[ENA]
¢þ
>WENV182825577
OKCK01000797
[OKCK] human gut metagenome; human gut
1080
1156
+
Asp
GTC
[ENA]
¢þ
>WENV182831465
OKEE01003410
[OKEE] human gut metagenome; human gut
923
847
-
Asp
GTC
[ENA]
¢þ
>WENV182831936
OKEI01001386
[OKEI] human gut metagenome; human gut
173
97
-
Asp
GTC
[ENA]
¢þ
>WENV182837583
OKGJ01000710
[OKGJ] human gut metagenome; human gut
1418
1494
+
Asp
GTC
[ENA]
¢þ
>WENV182842709
OKIF01001253
[OKIF] human gut metagenome; human gut
1182
1106
-
Asp
GTC
[ENA]
¢þ
>WENV182844843
OKIX01001912
[OKIX] human gut metagenome; human gut
930
854
-
Asp
GTC
[ENA]
¢þ
>WENV182846383
OKJL01004729
[OKJL] human gut metagenome; human gut
215
139
-
Asp
GTC
[ENA]
¢þ
>WENV182857525
OKNX01006038
[OKNX] human gut metagenome; human gut
527
603
+
Asp
GTC
[ENA]
¢þ
>WENV182859281
OKOL01004470
[OKOL] human gut metagenome; human gut
628
704
+
Asp
GTC
[ENA]
¢þ
>WENV182859751
OKOP01001363
[OKOP] human gut metagenome; human gut
3801
3877
+
Asp
GTC
[ENA]
¢þ
>WENV182961099
OKWK01000170
[OKWK] human gut metagenome; stool
59671
59595
-
Asp
GTC
[ENA]
¢þ
>WENV183081103
OLIZ01000532
[OLIZ] human gut metagenome; human gut
1946
1870
-
Asp
GTC
[ENA]
¢þ
>WENV183087783
OLJO01000784
[OLJO] human gut metagenome; human gut
2004
1928
-
Asp
GTC
[ENA]
¢þ
>W141402243
JDVC01000012
Bacillota
Finegoldia magna ALB8 [JDVC]
201
125
-
Asp
GTC
[ENA]
¡û
>W141402247
JDVC01000018
Bacillota
Finegoldia magna ALB8 [JDVC]
236
312
+
Asp
GTC
[ENA]
¡û
>W141402262
JDVC01000032
Bacillota
Finegoldia magna ALB8 [JDVC]
245
169
-
Asp
GTC
[ENA]
¡û
>W141402276
JDVC01000051
Bacillota
Finegoldia magna ALB8 [JDVC]
54321
54245
-
Asp
GTC
[ENA]
¡û
>WENV170674823
LCWY01007256
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
310
386
+
Asp
GTC
[ENA]
¢þ
>WENV170675311
LCWZ01038713
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
273
349
+
Asp
GTC
[ENA]
¢þ
>WENV170675422
LCWZ01068528
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
298
222
-
Asp
GTC
[ENA]
¢þ
>WENV170675429
LCWZ01070465
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
228
152
-
Asp
GTC
[ENA]
¢þ
>WENV170684370
LFRM01034955
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1199
1275
+
Asp
GTC
[ENA]
¢þ
>WENV170724957
LSQX01324941
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
138
62
-
Asp
GTC
[ENA]
¢þ
>W09124186
ACHM01000001
Bacillota
Finegoldia magna ATCC 53516 [ACHM]
28423
28347
-
Asp
GTC
[ENA]
¡û
>W09124200
ACHM01000020
Bacillota
Finegoldia magna ATCC 53516 [ACHM]
270852
270776
-
Asp
GTC
[ENA]
¡û
>W1910548286
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
1870
1946
+
Asp
GTC
[ENA]
¡û
>W1910665486
MCIB01000013
Bacillota
Thermohalobacter berrensis CTT3 [MCIB]
34549
34625
+
Asp
GTC
[ENA]
¡û
>W1910665490
MCIB01000031
Bacillota
Thermohalobacter berrensis CTT3 [MCIB]
4305
4229
-
Asp
GTC
[ENA]
¡û
>W1910874023
NDYA01000011
Bacillota
Finegoldia magna T160124 [NDYA]
863
939
+
Asp
GTC
[ENA]
¡û
>W1910874066
NDYB01000013
Bacillota
Finegoldia magna T151023 [NDYB]
898
974
+
Asp
GTC
[ENA]
¡û
>W1910874101
NDYC01000007
Bacillota
Finegoldia magna CCUG 54800 [NDYC]
1254
1330
+
Asp
GTC
[ENA]
¡û
>W1910874112
NDYC01000017
Bacillota
Finegoldia magna CCUG 54800 [NDYC]
453
529
+
Asp
GTC
[ENA]
¡û
>W1910874144
NDYD01000005
Bacillota
Finegoldia magna 12T306 [NDYD]
1221
1297
+
Asp
GTC
[ENA]
¡û
>W1910874153
NDYD01000012
Bacillota
Finegoldia magna 12T306 [NDYD]
150
226
+
Asp
GTC
[ENA]
¡û
>W1910874185
NDYE01000004
Bacillota
Finegoldia magna 12T273 [NDYE]
989
1065
+
Asp
GTC
[ENA]
¡û
>W1910874224
NDYF01000008
Bacillota
Finegoldia magna 12T272 [NDYF]
625
701
+
Asp
GTC
[ENA]
¡û
>W1910874255
NDYF01000013
Bacillota
Finegoldia magna 12T272 [NDYF]
339517
339441
-
Asp
GTC
[ENA]
¡û
>W1910874273
NDYG01000006
Bacillota
Finegoldia magna 09T494 [NDYG]
1067
1143
+
Asp
GTC
[ENA]
¡û
>W1910874343
NDYI01000002
Bacillota
Finegoldia magna 08T492 [NDYI]
1182
1258
+
Asp
GTC
[ENA]
¡û
>W1911532554
OGVE01000003
Bacillota
Helcococcus massiliensis Marseille-P4590 [OGVE]
76333
76257
-
Asp
GTC
[ENA]
¡û
>W1911596391
PNHD01000001
Bacillota
Finegoldia magna UMB0115 [PNHD]
257586
257510
-
Asp
GTC
[ENA]
¡û
>W1911596425
PNHD01000015
Bacillota
Finegoldia magna UMB0115 [PNHD]
1058
1134
+
Asp
GTC
[ENA]
¡û
>W1810573579
QEKV01000006
Bacillota
Ezakiella coagulans DSM 20705 [QEKV]
114344
114268
-
Asp
GTC
[ENA]
¡û
>W1810573592
QEKV01000008
Bacillota
Ezakiella coagulans DSM 20705 [QEKV]
79865
79789
-
Asp
GTC
[ENA]
¡û
>W10125921
AECM01000010
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
56663
56587
-
Asp
GTC
[ENA]
¡û
>W10125929
AECM01000025
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
293335
293259
-
Asp
GTC
[ENA]
¡û
>W1511351115
JRMY01000020
Bacillota
Tissierellia bacterium S7-1-4 S7.1.4 [JRMY]
25
101
+
Asp
GTC
[ENA]
¡û
>W1511351132
JRMY01000065
Bacillota
Tissierellia bacterium S7-1-4 S7.1.4 [JRMY]
538
462
-
Asp
GTC
[ENA]
¡û
>W11132852
AECM01000010
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
56663
56587
-
Asp
GTC
[ENA]
¡û
>W11132860
AECM01000025
Bacillota
Finegoldia magna ACS-171-V-Col3 [AECM]
293335
293259
-
Asp
GTC
[ENA]
¡û
>W11174023
AFUI01000011
Bacillota
Finegoldia magna SY403409CC001050417 [AFUI]
81141
81065
-
Asp
GTC
[ENA]
¡û
>W11174046
AFUI01000019
Bacillota
Finegoldia magna SY403409CC001050417 [AFUI]
31726
31650
-
Asp
GTC
[ENA]
¡û
>W1610039937
AZTB01000094
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
3202
3278
+
Asp
GTC
[ENA]
¡û
>W1610039943
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
1430
1354
-
Asp
GTC
[ENA]
¡û
>W1710037082
AZTB01000094
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
3202
3278
+
Asp
GTC
[ENA]
¡û
>W1710037088
AZTB01000130
Bacillota
Caloranaerobacter azorensis H53214 [AZTB]
1430
1354
-
Asp
GTC
[ENA]
¡û
>W1710506684
FMUS01000030
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
861
937
+
Asp
GTC
[ENA]
¡û
>W1710506699
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
1412
1336
-
Asp
GTC
[ENA]
¡û
>W1710531816
FNPV01000002
Bacillota
Tindallia californiensis [FNPV]
428524
428448
-
Asp
GTC
[ENA]
¡û
>W1710531831
FNPV01000005
Bacillota
Tindallia californiensis [FNPV]
82
158
+
Asp
GTC
[ENA]
¡û
>W1710563809
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
82
158
+
Asp
GTC
[ENA]
¡û
>W1710563839
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
242404
242328
-
Asp
GTC
[ENA]
¡û
>W1710586904
FQXO01000023
Bacillota
Caloranaerobacter azorensis DSM 13643 [FQXO]
30722
30798
+
Asp
GTC
[ENA]
¡û
>W1710586912
FQXO01000054
Bacillota
Caloranaerobacter azorensis DSM 13643 [FQXO]
15343
15267
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK