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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156307 (107 seq.)
>A171002762
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2036624
2036547
-
Pro
TGG
-
¡û
>A171003597
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1926136
1926059
-
Pro
TGG
-
¡û
>A171004370
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2681804
2681728
-
Pro
TGG
-
¡û
>A171004513
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
1725799
1725876
+
Pro
TGG
-
¡û
>A171004598
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
2324297
2324220
-
Pro
TGG
-
¡û
>A171004657
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
561658
561580
-
Pro
TGG
-
¡û
>A171004709
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
533608
533530
-
Pro
TGG
-
¡û
>A171004813
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
738539
738463
-
Pro
TGG
-
¡û
>A171004944
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3450317
3450394
+
Pro
TGG
-
¡û
>A171004994
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3406330
3406407
+
Pro
TGG
-
¡û
>A171005046
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3504395
3504472
+
Pro
TGG
-
¡û
>A171005108
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2893320
2893243
-
Pro
TGG
-
¡û
>A171005169
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1977564
1977487
-
Pro
TGG
-
¡û
>A171005193
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
500105
500182
+
Pro
TGG
-
¡û
>A171005255
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4311607
4311684
+
Pro
TGG
-
¡û
>A171005338
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2577226
2577150
-
Pro
TGG
-
¡û
>A171005428
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3290730
3290654
-
Pro
TGG
-
¡û
>A171005484
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3329914
3329838
-
Pro
TGG
-
¡û
>A171005522
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4055696
4055772
+
Pro
TGG
-
¡û
>A171005562
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
668010
668086
+
Pro
TGG
-
¡û
>A171005647
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2419348
2419272
-
Pro
TGG
-
¡û
>WENV180345377
OBLN01000002
[OBLN] sediment metagenome; sediment
36205
36282
+
Pro
TGG
[ENA]
¢þ
>WENV180345468
OBLN01000235
[OBLN] sediment metagenome; sediment
18964
18888
-
Pro
TGG
[ENA]
¢þ
>WENV170008120
AMZC01002255
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
3019
2941
-
Pro
TGG
[ENA]
¢þ
>WENV170014887
AZIC01002603
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
1380
1303
-
Pro
TGG
[ENA]
¢þ
>At1412
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
829936
829862
-
Pro
TGG
[Ensembl]
¡û
>At1488
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2009443
2009369
-
Pro
TGG
[Ensembl]
¡û
>At1546
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2224426
2224352
-
Pro
TGG
[Ensembl]
¡û
>WENV170684890
LFRM01063560
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
65421
65343
-
Pro
TGG
[ENA]
¢þ
>WENV170720705
LSQX01162923
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9735
9657
-
Pro
TGG
[ENA]
¢þ
>WENV170725631
LSQX01349946
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6103
6027
-
Pro
TGG
[ENA]
¢þ
>WENV170784338
MCHG01000948
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
1244
1320
+
Pro
TGG
[ENA]
¢þ
>W1920000151
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
457252
457175
-
Pro
TGG
[ENA]
¡û
>W1920000242
JJOR01000109
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
1192
1115
-
Pro
TGG
[ENA]
¡û
>W1920000243
JJOS01000035
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
25308
25231
-
Pro
TGG
[ENA]
¡û
>W1920000244
JJOT01000109
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
23738
23815
+
Pro
TGG
[ENA]
¡û
>W1920000245
JJPF01000127
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
544
467
-
Pro
TGG
[ENA]
¡û
>W1920000246
JJPH01000020
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
23733
23810
+
Pro
TGG
[ENA]
¡û
>W1920000247
JJPN01000023
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
9958
9881
-
Pro
TGG
[ENA]
¡û
>W1920000248
JJPO01000135
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
54999
54922
-
Pro
TGG
[ENA]
¡û
>W1920000249
JJPP01000038
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
5086
5009
-
Pro
TGG
[ENA]
¡û
>W1920000250
JJPQ01000061
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
9968
9891
-
Pro
TGG
[ENA]
¡û
>W1920000251
JJPR01000074
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
25367
25290
-
Pro
TGG
[ENA]
¡û
>W1920000252
JJPT01000038
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
156721
156644
-
Pro
TGG
[ENA]
¡û
>W1920000253
JJPU01000079
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
12532
12609
+
Pro
TGG
[ENA]
¡û
>W1920000254
JJPV01000050
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
4308
4231
-
Pro
TGG
[ENA]
¡û
>W1920000255
JJPX01000156
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
25367
25290
-
Pro
TGG
[ENA]
¡û
>W1920000256
JJPY01000041
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
9973
9896
-
Pro
TGG
[ENA]
¡û
>W1920000257
JJPZ01000071
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
9960
9883
-
Pro
TGG
[ENA]
¡û
>W1920000258
JJQA01000106
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
26010
25933
-
Pro
TGG
[ENA]
¡û
>W1920000259
JJQB01000079
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
8306
8229
-
Pro
TGG
[ENA]
¡û
>W1920000260
JJQC01000020
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
7976
7899
-
Pro
TGG
[ENA]
¡û
>W1920000261
JJQD01000116
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
5086
5009
-
Pro
TGG
[ENA]
¡û
>W1920000262
JJQE01000112
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
544
467
-
Pro
TGG
[ENA]
¡û
>W1920000263
JJQG01000168
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
1070
993
-
Pro
TGG
[ENA]
¡û
>W1920000264
JJQH01000075
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
1190
1113
-
Pro
TGG
[ENA]
¡û
>W1920000265
JJQI01000118
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
74582
74505
-
Pro
TGG
[ENA]
¡û
>W1920000266
JJQM01000166
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
1193
1116
-
Pro
TGG
[ENA]
¡û
>W1920000267
JJQN01000042
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
40438
40361
-
Pro
TGG
[ENA]
¡û
>W1920000268
JJQO01000287
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
1196
1119
-
Pro
TGG
[ENA]
¡û
>W1920000269
JJQP01000268
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
1196
1119
-
Pro
TGG
[ENA]
¡û
>W1920000270
JJQQ01000144
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
30426
30349
-
Pro
TGG
[ENA]
¡û
>W1920000271
JJQR01000160
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
1190
1113
-
Pro
TGG
[ENA]
¡û
>W1920000272
JJQS01000117
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
1194
1117
-
Pro
TGG
[ENA]
¡û
>W1920000273
JJQT01000126
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
29755
29832
+
Pro
TGG
[ENA]
¡û
>W1920000274
JJQU01000050
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
25312
25235
-
Pro
TGG
[ENA]
¡û
>W1920000275
JJQW01000026
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
1192
1115
-
Pro
TGG
[ENA]
¡û
>W1920000276
JJQX01000195
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
1190
1113
-
Pro
TGG
[ENA]
¡û
>W1920000277
JJQZ01000024
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
1190
1113
-
Pro
TGG
[ENA]
¡û
>W1920000283
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1531815
1531738
-
Pro
TGG
[ENA]
¡û
>W1920000320
LMVP01000058
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
1948
1872
-
Pro
TGG
[ENA]
¡û
>W1920000343
LZPK01000296
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
16567
16643
+
Pro
TGG
[ENA]
¡û
>W1920000453
MDTP02000220
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
1244
1320
+
Pro
TGG
[ENA]
¡û
>W1910569387
JJOU01000048
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
9958
9881
-
Pro
TGG
[ENA]
¡û
>W1910569439
JJOV01000025
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
28707
28630
-
Pro
TGG
[ENA]
¡û
>W1910569518
JJOW01000239
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
15041
14964
-
Pro
TGG
[ENA]
¡û
>W1910569569
JJOX01000079
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
32360
32283
-
Pro
TGG
[ENA]
¡û
>W1910569622
JJOY01000049
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
32345
32268
-
Pro
TGG
[ENA]
¡û
>W1910569636
JJOZ01000012
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
38145
38068
-
Pro
TGG
[ENA]
¡û
>W1910569694
JJPA01000067
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
25875
25798
-
Pro
TGG
[ENA]
¡û
>W1910569743
JJPB01000037
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
544
467
-
Pro
TGG
[ENA]
¡û
>W1910569835
JJPC01000164
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
5089
5012
-
Pro
TGG
[ENA]
¡û
>W1910569878
JJPD01000180
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
544
467
-
Pro
TGG
[ENA]
¡û
>W1910569901
JJPE01000038
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
544
467
-
Pro
TGG
[ENA]
¡û
>W1910570013
JJPG01000060
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
544
467
-
Pro
TGG
[ENA]
¡û
>W1910570136
JJPI01000125
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
4308
4231
-
Pro
TGG
[ENA]
¡û
>W1910570192
JJPJ01000157
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
4308
4231
-
Pro
TGG
[ENA]
¡û
>W1910570196
JJPK01000009
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
4308
4231
-
Pro
TGG
[ENA]
¡û
>W1910570257
JJPL01000057
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
5086
5009
-
Pro
TGG
[ENA]
¡û
>W1910570312
JJPM01000109
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
6997
6920
-
Pro
TGG
[ENA]
¡û
>W1910570614
JJPS01000087
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
10075
10152
+
Pro
TGG
[ENA]
¡û
>W1910570801
JJPW01000010
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
12606
12683
+
Pro
TGG
[ENA]
¡û
>W1910571272
JJQF01000051
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
5200
5277
+
Pro
TGG
[ENA]
¡û
>W1910571499
JJQJ01000178
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
1190
1113
-
Pro
TGG
[ENA]
¡û
>W1910571518
JJQK01000045
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
55215
55138
-
Pro
TGG
[ENA]
¡û
>W1910571589
JJQL01000053
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
30374
30297
-
Pro
TGG
[ENA]
¡û
>W1910572106
JJQV01000008
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
1190
1113
-
Pro
TGG
[ENA]
¡û
>W1910572276
JJQY01000105
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
6335
6258
-
Pro
TGG
[ENA]
¡û
>W1910572385
JJRA01000117
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
1192
1115
-
Pro
TGG
[ENA]
¡û
>W1910572397
JJRB01000023
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
149284
149361
+
Pro
TGG
[ENA]
¡û
>W1910661845
MBKP01000004
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
93053
92976
-
Pro
TGG
[ENA]
¡û
>W1610000014
AAAR03000002
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
264641
264565
-
Pseudo
TGG
[ENA]
¡û
>W1610045098
BBBC01000009
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
29918
29996
+
Pseudo
TGG
[ENA]
¡û
>W1610046878
BBCW01000005
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
53431
53509
+
Pseudo
TGG
[ENA]
¡û
>W1610048624
BBEF01000121
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
9638
9714
+
Pseudo
TGG
[ENA]
¡û
>W1610605092
LFRP01000013
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
65421
65343
-
Pseudo
TGG
[ENA]
¡û
>W1610919893
LSRV01000007
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
22422
22499
+
Pseudo
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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