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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156311 (17 seq.)
>A171004361
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
4058184
4058259
+
Arg
CCT
-
¡û
>A171004539
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
1961514
1961439
-
Arg
CCT
-
¡û
>A171004589
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
2087875
2087950
+
Arg
CCT
-
¡û
>A171004721
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
370158
370235
+
Arg
CCT
-
¡û
>A171005317
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
4099855
4099930
+
Arg
CCT
-
¡û
>A171005554
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
486592
486517
-
Arg
CCT
-
¡û
>WENV170008189
AMZC01003983
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
13098
13021
-
Arg
CCT
[ENA]
¢þ
>At1437
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
704447
704521
+
Arg
CCT
[Ensembl]
¡û
>WENV170685691
LFRM01104515
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
111782
111705
-
Arg
CCT
[ENA]
¢þ
>W1910230870
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
225769
225844
+
Arg
CCT
[ENA]
¡û
>W1910570737
JJPU01000154
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
100013
100088
+
Arg
CCT
[ENA]
¡û
>W1910571255
JJQF01000026
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910572054
JJQU01000037
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
3737
3812
+
Arg
CCT
[ENA]
¡û
>W1910635255
LMVP01000223
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
45689
45764
+
Arg
CCT
[ENA]
¡û
>W1610000005
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
584796
584873
+
Arg
CCT
[ENA]
¡û
>W1610046875
BBCW01000001
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
17211
17288
+
Arg
CCT
[ENA]
¡û
>W1610605096
LFRP01000015
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
111782
111705
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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