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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156543 (62 seq.)
>W1710785359
LJHU01000022
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
16382
16306
-
Lys
TTT
[ENA]
¡û
>W1710862006
LMEB01000009
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
101146
101222
+
Lys
TTT
[ENA]
¡û
>W1710863820
LMFL01000001
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
370329
370405
+
Lys
TTT
[ENA]
¡û
>W1710863833
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
22718
22794
+
Lys
TTT
[ENA]
¡û
>W1710865542
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
343090
343014
-
Lys
TTT
[ENA]
¡û
>W1710873817
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
598046
598122
+
Lys
TTT
[ENA]
¡û
>W1710876105
LMOY01000009
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
142009
142085
+
Lys
TTT
[ENA]
¡û
>W1710877296
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
758962
759038
+
Lys
TTT
[ENA]
¡û
>W1711407961
MGLI01000132
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
1079
1003
-
Lys
TTT
[ENA]
¡û
>W1711407998
MGLN01000071
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
18692
18768
+
Lys
TTT
[ENA]
¡û
>C171094865
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2660402
2660326
-
Lys
TTT
-
¡û
>W131052413
AMYY01000002
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
24244
24168
-
Lys
TTT
[ENA]
¡û
>W131221573
AUAO01000003
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
45843
45767
-
Lys
TTT
[ENA]
¡û
>WENV181169919
OEIV010014869
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1346
1270
-
Lys
TTT
[ENA]
¢þ
>WENV181222998
OFDC01001039
[OFDC] hot springs metagenome; Water
11850
11926
+
Lys
TTT
[ENA]
¢þ
>WENV181227191
OFDN01003060
[OFDN] hot springs metagenome; Water
587
663
+
Lys
TTT
[ENA]
¢þ
>WENV181371049
OFQU01012305
[OFQU] wastewater metagenome; Exp Tend CN 90WW
882
958
+
Lys
TTT
[ENA]
¢þ
>WENV181371648
OFQV01033756
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
271
347
+
Lys
TTT
[ENA]
¢þ
>WENV181378640
OFRB01040909
[OFRB] wastewater metagenome; Exp Tend CN 0WW
192
116
-
Lys
TTT
[ENA]
¢þ
>WENV181379153
OFRC01034082
[OFRC] wastewater metagenome; Exp Tend CN 10WW
402
478
+
Lys
TTT
[ENA]
¢þ
>WENV181381832
OFRF01015698
[OFRF] wastewater metagenome; Exp Tend CN 50WW
596
520
-
Lys
TTT
[ENA]
¢þ
>WENV181384313
OFRI01000131
[OFRI] wastewater metagenome; Exp Tend VB 90WW
7747
7671
-
Lys
TTT
[ENA]
¢þ
>W08010819
ABRU01000024
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
32350
32426
+
Lys
TTT
[ENA]
¡û
>WENV170192853
CEPG01020796
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
827
751
-
Lys
TTT
[ENA]
¢þ
>WENV170200859
CEPP01001620
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4756
4680
-
Lys
TTT
[ENA]
¢þ
>WENV170553613
CXWK01025532
[CXWK] wastewater metagenome; activated sludge
1188
1112
-
Lys
TTT
[ENA]
¢þ
>WENV170574331
FLYM01026500
[FLYM] hot springs metagenome; Sediment
1795
1719
-
Lys
TTT
[ENA]
¢þ
>WENV170658951
JUGB01001479
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
1741
1665
-
Lys
TTT
[ENA]
¢þ
>WENV170711817
LNFM01007564
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
26460
26384
-
Lys
TTT
[ENA]
¢þ
>WENV170712368
LNFM01012551
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11005
11081
+
Lys
TTT
[ENA]
¢þ
>WENV170713768
LNFM01041293
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
190
114
-
Lys
TTT
[ENA]
¢þ
>WENV170842007
MDSZ01232121
[MDSZ] marine metagenome; seawater
2944
2868
-
Lys
TTT
[ENA]
¢þ
>C181056264
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
451812
451736
-
Lys
TTT
-
¡û
>C191159636
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
1468480
1468404
-
Lys
TTT
-
¡û
>C191166120
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
2495203
2495127
-
Lys
TTT
-
¡û
>C191189136
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2139504
2139428
-
Lys
TTT
-
¡û
>W141712465
JMQR01000169
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
1101
1177
+
Lys
TTT
[ENA]
¡û
>W141731212
JNIX01000007
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
211537
211613
+
Lys
TTT
[ENA]
¡û
>W1910725218
MGLJ01000185
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
932
856
-
Lys
TTT
[ENA]
¡û
>W1910725301
MGLL01000206
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
301
225
-
Lys
TTT
[ENA]
¡û
>W1911737834
QTTA01000006
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
29055
28979
-
Lys
TTT
[ENA]
¡û
>W1911738162
QUOQ01000004
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
199263
199187
-
Lys
TTT
[ENA]
¡û
>W10109853
ADBM01000006
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
82286
82362
+
Lys
TTT
[ENA]
¡û
>C10102192
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1350753
1350829
+
Lys
TTT
[Ensembl]
¡û
>W11112290
ADBM01000006
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
82286
82362
+
Lys
TTT
[ENA]
¡û
>W1511489467
JWSY01000009
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
230703
230627
-
Lys
TTT
[ENA]
¡û
>W1511547872
JZRG01000008
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
31352
31276
-
Lys
TTT
[ENA]
¡û
>C161047039
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
1641777
1641853
+
Lys
TTT
[Ensembl]
¡û
>C161089092
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
614695
614771
+
Lys
TTT
[Ensembl]
¡û
>W1610074217
BCWM01000007
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
140208
140132
-
Lys
TTT
[ENA]
¡û
>W1610649165
LJHU01000022
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
16382
16306
-
Lys
TTT
[ENA]
¡û
>W1610724352
LMEB01000009
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
101146
101222
+
Lys
TTT
[ENA]
¡û
>W1610726166
LMFL01000001
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
370329
370405
+
Lys
TTT
[ENA]
¡û
>W1610726179
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
22718
22794
+
Lys
TTT
[ENA]
¡û
>W1610727888
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
343090
343014
-
Lys
TTT
[ENA]
¡û
>W1610736163
LMNC01000001
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
598046
598122
+
Lys
TTT
[ENA]
¡û
>W1610738451
LMOY01000009
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
142009
142085
+
Lys
TTT
[ENA]
¡û
>W1610739642
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
758962
759038
+
Lys
TTT
[ENA]
¡û
>WENV079882
AATN01005810
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
630
554
-
Lys
TTT
[ENA]
>W1710071335
BCWM01000007
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
140208
140132
-
Lys
TTT
[ENA]
¡û
>W1710084610
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
742424
742348
-
Lys
TTT
[ENA]
¡û
>W1710527010
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
126330
126406
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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