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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158999 (29 seq.)
>A171001456
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1815099
1815174
+
Arg
TCT
-
¡û
>A171002804
CP003117
Euryarchaeota
Methanothrix harundinacea 6Ac [CP003117]
2323483
2323407
-
Arg
TCT
-
¡û
>A171005376
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
2230273
2230349
+
Arg
TCT
-
¡û
>A171006819
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
906803
906728
-
Arg
TCT
-
¡û
>WENV181229723
OFEK01000030
[OFEK] activated sludge metagenome; Anaerobic digester
39582
39506
-
Arg
TCT
[ENA]
¢þ
>At0970
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
1631638
1631712
+
Arg
TCT
[Ensembl]
¡û
>WENV170668554
LAHQ01000916
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
3704
3781
+
Arg
TCT
[ENA]
¢þ
>WENV170670573
LAHT01052536
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
781
858
+
Arg
TCT
[ENA]
¢þ
>WENV170671032
LAHU01009364
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3972
4049
+
Arg
TCT
[ENA]
¢þ
>WENV170677462
LDZT01005510
[LDZT] terrestrial metagenome; oil reservoir sample SB1
21158
21081
-
Arg
TCT
[ENA]
¢þ
>WENV170678647
LDZU01003535
[LDZU] terrestrial metagenome; oil reservoir sample SB2
50742
50819
+
Arg
TCT
[ENA]
¢þ
>W1910228331
FNMU01000004
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
165332
165407
+
Arg
TCT
[ENA]
¡û
>W1910229856
FOHQ01000005
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
5276
5352
+
Arg
TCT
[ENA]
¡û
>W1910471820
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
334215
334290
+
Arg
TCT
[ENA]
¡û
>W1910575279
JRHO01000014
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
794853
794929
+
Arg
TCT
[ENA]
¡û
>W1910582993
JWTK01000007
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
9227
9302
+
Arg
TCT
[ENA]
¡û
>W1910672535
MCNQ01000002
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
93222
93147
-
Arg
TCT
[ENA]
¡û
>W1911492134
OBDR01000005
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
93218
93143
-
Arg
TCT
[ENA]
¡û
>W1911633774
PVBU01000008
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
2625
2550
-
Arg
TCT
[ENA]
¡û
>W1911653215
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
1295698
1295623
-
Arg
TCT
[ENA]
¡û
>W1610000124
AADH02000002
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
172463
172539
+
Arg
TCT
[ENA]
¡û
>W1610613366
LGFT01000022
Euryarchaeota
Methanothrix harundinacea [LGFT]
21158
21081
-
Arg
TCT
[ENA]
¡û
>W1610614362
LGHB01000010
Euryarchaeota
Methanothrix harundinacea [LGHB]
50742
50819
+
Arg
TCT
[ENA]
¡û
>W1610686045
LKUG01000094
Euryarchaeota
Methanosaeta sp. SDB [LKUG]
163
240
+
Arg
TCT
[ENA]
¡û
>W1610686053
LKUG01000475
Euryarchaeota
Methanosaeta sp. SDB [LKUG]
2614
2691
+
Arg
TCT
[ENA]
¡û
>W1610919886
LSRU01000189
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
1261
1186
-
Arg
TCT
[ENA]
¡û
>W1610945920
LUYE01000018
Euryarchaeota
Methanosarcinales archaeon Methan_01 [LUYE]
42604
42527
-
Arg
TCT
[ENA]
¡û
>W1610945968
LUYF01000347
Euryarchaeota
Methanosarcinales archaeon Methan_02 [LUYF]
112
189
+
Arg
TCT
[ENA]
¡û
>W1611052512
MAFX01000049
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
2559
2634
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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