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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159264 (24 seq.)
>C171057471
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
442192
442116
-
Pro
TGG
-
¡û
>W131169218
AREO01000006
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
60105
60029
-
Pro
TGG
[ENA]
¡û
>W141042556
AMEO01000110
Bacillota
Selenomonas sp. oral taxon 138 oral taxon 138 str. F0429 [AMEO]
9236
9312
+
Pro
TGG
[ENA]
¡û
>WENV180620580
OCQB01128001
[OCQB] human gut metagenome; human gut
282
358
+
Pro
TGG
[ENA]
¢þ
>WENV180828348
ODKA01006517
[ODKA] human metagenome; G_DNA_Stool
4014
4090
+
Pro
TGG
[ENA]
¢þ
>WENV182651184
OJMH01000991
[OJMH] human gut metagenome; feces
29296
29372
+
Pro
TGG
[ENA]
¢þ
>WENV183042619
OLGD01006225
[OLGD] human gut metagenome; faeces
2647
2571
-
Pro
TGG
[ENA]
¢þ
>WENV183075918
OLIW01000803
[OLIW] human gut metagenome; feces
29233
29309
+
Pro
TGG
[ENA]
¢þ
>WENV170002593
AGTN01077986
[AGTN] bioreactor metagenome; poplar biomass
196
120
-
Pro
TGG
[ENA]
¢þ
>WENV170005377
AMCI01003495
[AMCI] gut metagenome; fecal sample from gut
696
620
-
Pro
TGG
[ENA]
¢þ
>WENV170637441
JFBN01322528
[JFBN] chicken gut metagenome; ceca of Broiler chicken
370
294
-
Pro
TGG
[ENA]
¢þ
>WENV170686931
LFRM01169825
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
580
656
+
Pro
TGG
[ENA]
¢þ
>WENV170690282
LFRM01333450
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
624
700
+
Pro
TGG
[ENA]
¢þ
>WENV170691295
LFRM01391235
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
551
627
+
Pro
TGG
[ENA]
¢þ
>WENV170724256
LSQX01298611
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
64440
64516
+
Pro
TGG
[ENA]
¢þ
>C181185413
CP029804
Bacillota
Erysipelothrix rhusiopathiae ML101 [CP029804]
1646678
1646602
-
Pro
TGG
-
¡û
>C191108216
CP033601
Bacillota
Erysipelothrix rhusiopathiae KC-Sb-R1 [CP033601]
269986
270062
+
Pro
TGG
-
¡û
>C191122107
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
158652
158576
-
Pro
TGG
-
¡û
>C191211027
LR134439
Bacillota
Erysipelothrix rhusiopathiae NCTC8163 [LR134439]
296445
296521
+
Pro
TGG
-
¡û
>W09128002
ACLK01000024
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
25095
25171
+
Pro
TGG
[ENA]
¡û
>C151007182
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1099917
1099841
-
Pro
TGG
[Ensembl]
¡û
>C11108875
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1580204
1580128
-
Pro
TGG
[Ensembl]
¡û
>C161078620
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
286304
286380
+
Pro
TGG
-
¡û
>W1610204966
FCNA01000031
Bacillota
Clostridiales bacterium CHKCI006 [FCNA]
246
170
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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