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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161339 (11 seq.)
>A171002485
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
19553
19478
-
Glu
CTC
-
¡û
>A171003102
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
2512664
2512738
+
Glu
CTC
-
¡û
>A171004397
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
1232577
1232652
+
Glu
CTC
-
¡û
>A171006155
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
1232966
1233041
+
Glu
CTC
-
¡û
>A171006691
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1041929
1042003
+
Glu
CTC
-
¡û
>A171006732
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
1075535
1075609
+
Glu
CTC
-
¡û
>WENV170008797
APHM01006423
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2398
2472
+
Glu
CTC
[ENA]
¢þ
>W1910230456
FORO01000033
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
12400
12474
+
Glu
CTC
[ENA]
¡û
>W1911591347
PKKI01000049
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
11971
12045
+
Glu
CTC
[ENA]
¡û
>W1610004110
AGIM01000012
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
104142
104216
+
Glu
CTC
[ENA]
¡û
>W1610012181
AOIC01000097
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
11212
11286
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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