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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162613 (13 seq.)
>C171130370
LT635893
Gammaproteobacteria
Buchnera aphidicola Bcipseudotaxifoliae [LT635893]
198697
198770
+
Asp
GTC
-
¡û
>C171130401
LT667500
Gammaproteobacteria
Buchnera aphidicola BCifornacula [LT667500]
196972
197045
+
Asp
GTC
-
¡û
>C002617
CP000238
Gammaproteobacteria
Baumannia cicadellinicola str. Hc [Homalodisca coagulata] [CP000238]
175644
175720
+
Asp
GTC
[Ensembl]
¡û
>C002746
BX248583
Gammaproteobacteria
Candidatus Blochmannia floridanus [BX248583]
664177
664101
-
Asp
GTC
[Ensembl]
¡û
>WENV180097170
MTBK01172230
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
333
407
+
Asp
GTC
[ENA]
¢þ
>WENV180098535
MTBK01251987
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
2037
1961
-
Asp
GTC
[ENA]
¢þ
>WENV170717003
LSQX01020135
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
743
669
-
Asp
GTC
[ENA]
¢þ
>WENV170724397
LSQX01304087
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3790
3864
+
Asp
GTC
[ENA]
¢þ
>WENV170976830
MTKZ01012763
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
13070
13144
+
Asp
GTC
[ENA]
¢þ
>C191132533
CP034873
Gammaproteobacteria
Buchnera aphidicola [Hyadaphis tataricae] Hta [CP034873]
274914
274987
+
Asp
GTC
-
¡û
>C09103171
CP001277
Gammaproteobacteria
Candidatus Hamiltonella defensa 5AT [Acyrthosiphon pisum] T5A [CP001277]
679727
679803
+
Asp
GTC
[Ensembl]
¡û
>C151086318
CP011787
Gammaproteobacteria
Candidatus Baumannia cicadellinicola B-GSS [CP011787]
156734
156810
+
Asp
GTC
-
¡û
>C161108607
LN999832
Gammaproteobacteria
Candidatus Gullanella endobia [LN999832]
132081
132157
+
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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