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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163697 (17 seq.)
>A171004123
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
131766
131840
+
Arg
TCT
-
¡û
>A178000444
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
2038820
2038925
+
Arg
TCT
-
¡û
>A178000672
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1941214
1941318
+
Arg
TCT
-
¡û
>A179000093
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
912487
912590
+
Arg
TCT
-
¡û
>WENV180318354
OBKM01000494
[OBKM] metagenome; water
6832
6758
-
Arg
TCT
[ENA]
¢þ
>WENV180318400
OBKM01000687
[OBKM] metagenome; water
14403
14477
+
Arg
TCT
[ENA]
¢þ
>WENV170009247
APHM01021865
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4510
4584
+
Arg
TCT
[ENA]
¢þ
>At1689
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
434096
434200
+
Arg
TCT
[Ensembl]
¡û
>WENV170681490
LFFM01001109
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
52
126
+
Arg
TCT
[ENA]
¢þ
>WENV170682024
LFFM01005060
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
48
125
+
Arg
TCT
[ENA]
¢þ
>WENV170682077
LFFM01005792
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
76
2
-
Arg
TCT
[ENA]
¢þ
>W1910006745
BBJP01000013
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
137090
137164
+
Arg
TCT
[ENA]
¡û
>W1910340477
FTNO01000002
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
338696
338771
+
Arg
TCT
[ENA]
¡û
>W1910568541
JDTH01000001
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
306044
305969
-
Arg
TCT
[ENA]
¡û
>W1910572762
JNFH02000051
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
17286
17212
-
Arg
TCT
[ENA]
¡û
>W1910912485
NHPJ01000003
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
35108
35034
-
Arg
TCT
[ENA]
¡û
>W1610682146
LKMK01000153
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
842
768
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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