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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180620 (50 seq.)
>W1710892680
LNDZ01000026
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
130272
130356
+
Leu
GAG
[ENA]
¡û
>W1711326604
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
308697
308781
+
Leu
GAG
[ENA]
¡û
>C171033763
CP014839
Betaproteobacteria
Pandoraea thiooxydans ATSB16 [CP014839]
2677879
2677795
-
Leu
GAG
-
¡û
>C171085182
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
3166706
3166622
-
Leu
GAG
-
¡û
>W131050710
AMXA01000006
Betaproteobacteria
Thauera sp. 28 [AMXA]
78358
78274
-
Leu
GAG
[ENA]
¡û
>W131050761
AMXB01000005
Betaproteobacteria
Thauera sp. 27 [AMXB]
79177
79093
-
Leu
GAG
[ENA]
¡û
>W131050800
AMXC01000002
Betaproteobacteria
Thauera sp. 63 [AMXC]
143374
143458
+
Leu
GAG
[ENA]
¡û
>W131050870
AMXD01000034
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
24843
24759
-
Leu
GAG
[ENA]
¡û
>W131050910
AMXE01000006
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
56703
56787
+
Leu
GAG
[ENA]
¡û
>W131050981
AMXF01000075
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
10828
10912
+
Leu
GAG
[ENA]
¡û
>WENV180000113
CZVZ01000738
[CZVZ] metagenome; unknown
3266
3182
-
Leu
GAG
[ENA]
¢þ
>WENV180296884
OBJA01004219
[OBJA] soil metagenome; sediment, water from around vicinity
5875
5959
+
Leu
GAG
[ENA]
¢þ
>W141078505
ATJV01000013
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
75077
75161
+
Leu
GAG
[ENA]
¡û
>W08008000
ABKT01000015
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
47773
47857
+
Leu
GAG
[ENA]
¡û
>WENV181834873
OGVG01005878
[OGVG] freshwater metagenome; freshwater
38
122
+
Leu
GAG
[ENA]
¢þ
>WENV170000249
AERA01034584
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
716
632
-
Leu
GAG
[ENA]
¢þ
>WENV170009734
APMI01002324
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
10289
10373
+
Leu
GAG
[ENA]
¢þ
>WENV170011427
APMI01065134
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
94
10
-
Leu
GAG
[ENA]
¢þ
>WENV170011431
APMI01065244
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
553
469
-
Leu
GAG
[ENA]
¢þ
>WENV170560823
CZCA01000662
[CZCA] anaerobic digester metagenome; anaerobic digester
43388
43472
+
Leu
GAG
[ENA]
¢þ
>WENV170650794
JRYE01021318
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
1430
1514
+
Leu
GAG
[ENA]
¢þ
>WENV170652550
JRYH01005753
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1847
1931
+
Leu
GAG
[ENA]
¢þ
>WENV170652797
JRYH01030756
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
3933
4017
+
Leu
GAG
[ENA]
¢þ
>WENV170653054
JRYI01001647
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1100
1184
+
Leu
GAG
[ENA]
¢þ
>WENV170655815
JTFN01079006
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
212
296
+
Leu
GAG
[ENA]
¢þ
>WENV170709201
LNFM01000179
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
29288
29204
-
Leu
GAG
[ENA]
¢þ
>C181164176
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2042174
2042258
+
Leu
GAG
-
¡û
>W141561695
JHYR01000002
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
74409
74493
+
Leu
GAG
[ENA]
¡û
>W1910183541
BJNV01000007
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
119394
119478
+
Leu
GAG
[ENA]
¡û
>W1910828056
MWUM01000003
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
231858
231774
-
Leu
GAG
[ENA]
¡û
>W1911114378
NOIH01000015
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
78977
78893
-
Leu
GAG
[ENA]
¡û
>SRA1001966
SRR001308.151941
Metagenomic characterization of a wastewater treatment plant (SRP000180)
159
243
+
Leu
GAG
[SRA]
>SRA1002090
SRR001308.235477
Metagenomic characterization of a wastewater treatment plant (SRP000180)
68
152
+
Leu
GAG
[SRA]
>W1810679148
QKOE01000005
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
236676
236760
+
Leu
GAG
[ENA]
¡û
>C151084568
CP011568
Betaproteobacteria
Pandoraea thiooxydans DSM 25325 [CP011568]
2282338
2282254
-
Leu
GAG
-
¡û
>C10113178
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
1962601
1962685
+
Leu
GAG
[Ensembl]
¡û
>WENV11100607
AERA01034584
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
716
632
-
Leu
GAG
[ENA]
¡û
>W1511398309
JTDM01000020
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
591899
591983
+
Leu
GAG
[ENA]
¡û
>W1511686466
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
2070339
2070423
+
Leu
GAG
[ENA]
¡û
>W11185957
CACR01002277
Betaproteobacteria
Thauera selenatis AX [CACR]
33171
33087
-
Leu
GAG
[ENA]
¡û
>C161075089
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
443688
443772
+
Leu
GAG
[Ensembl]
¡û
>W1610042900
BAZL01000050
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
6832
6748
-
Leu
GAG
[ENA]
¡û
>W1610071676
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
191721
191637
-
Leu
GAG
[ENA]
¡û
>W1610752946
LNDZ01000026
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
130272
130356
+
Leu
GAG
[ENA]
¡û
>W1611063340
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
308697
308781
+
Leu
GAG
[ENA]
¡û
>WENV080223
AATO01013764
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
452
368
-
Leu
GAG
[ENA]
>W1710040060
BAZL01000050
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
6832
6748
-
Leu
GAG
[ENA]
¡û
>W1710068878
BCUG01000002
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
191721
191637
-
Leu
GAG
[ENA]
¡û
>W1710527988
FNLO01000010
Betaproteobacteria
Chitinasiproducens palmae JS23 [FNLO]
57137
57053
-
Leu
GAG
[ENA]
¡û
>W1710539454
FNVJ01000008
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
80241
80325
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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