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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180749 (53 seq.)
>W1711511041
MLCB01000098
Alphaproteobacteria
Planktotalea frisia [MLCB]
156
72
-
Leu
TAG
[ENA]
¡û
>W1711621325
MPDA01000001
Alphaproteobacteria
Roseobacter sp. MedPE-SWde [MPDA]
535420
535336
-
Leu
TAG
[ENA]
¡û
>W1711798584
MWVJ01000015
Alphaproteobacteria
Pseudophaeobacter leonis [MWVJ]
75027
75111
+
Leu
TAG
[ENA]
¡û
>C171047886
CP016364
Alphaproteobacteria
Phaeobacter porticola P97 [CP016364]
1952860
1952776
-
Leu
TAG
-
¡û
>w023684
AAYB01000004
Alphaproteobacteria
Roseobacter sp. CCS2 [AAYB]
90955
90869
-
Leu
TAG
[ENA]
¡û
>w013125
AANB01000006
Alphaproteobacteria
Roseobacter sp. MED193 [AANB]
188273
188359
+
Leu
TAG
[ENA]
¡û
>WENV180042351
LQAE01004394
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
668
584
-
Leu
TAG
[ENA]
¢þ
>W141065722
AQQW01000001
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
261722
261638
-
Leu
TAG
[ENA]
¡û
>W08005833
ABIF01000001
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
685523
685442
-
Leu
TAG
[ENA]
¡û
>W141151630
AXBF01000002
Alphaproteobacteria
Pseudophaeobacter arcticus DSM 23566 [AXBF]
1403873
1403957
+
Leu
TAG
[ENA]
¡û
>W141284615
JALZ01000009
Alphaproteobacteria
Roseivivax halodurans JCM 10272 [JALZ]
113404
113320
-
Leu
TAG
[ENA]
¡û
>W141284798
JAME01000002
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
88769
88853
+
Leu
TAG
[ENA]
¡û
>WENV183704724
PDWI01000548
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
42868
42784
-
Leu
TAG
[ENA]
¢þ
>WENV183718998
PDWJ01008604
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2905
2821
-
Leu
TAG
[ENA]
¢þ
>WENV170014895
AZIC01003120
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
257
341
+
Leu
TAG
[ENA]
¢þ
>WENV170024980
BCQL01175236
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
443
359
-
Leu
TAG
[ENA]
¢þ
>WENV170499766
CEVT01185826
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1512
1428
-
Leu
TAG
[ENA]
¢þ
>WENV170646335
JQGR01000028
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
21492
21408
-
Leu
TAG
[ENA]
¢þ
>WENV170783740
MAAC01018483
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
25177
25261
+
Leu
TAG
[ENA]
¢þ
>WENV170791539
MDSV01084899
[MDSV] marine metagenome; seawater
24095
24179
+
Leu
TAG
[ENA]
¢þ
>C181008507
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
1949808
1949724
-
Leu
TAG
-
¡û
>C181008678
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
1954640
1954556
-
Leu
TAG
-
¡û
>C181009651
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
1983412
1983328
-
Leu
TAG
-
¡û
>C181009708
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
1972258
1972174
-
Leu
TAG
-
¡û
>W09111669
ABXE01000016
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
65847
65931
+
Leu
TAG
[ENA]
¡û
>W1910285076
FREU01000005
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-30 [FREU]
42845
42761
-
Leu
TAG
[ENA]
¡û
>W1910285277
FREY01000009
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-04 [FREY]
43849
43765
-
Leu
TAG
[ENA]
¡û
>W1910442662
FWFK01000002
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
333826
333742
-
Leu
TAG
[ENA]
¡û
>W1910499758
FXYE01000002
Alphaproteobacteria
Actibacterium lipolyticum CECT 8621 [FXYE]
143387
143303
-
Leu
TAG
[ENA]
¡û
>W1911539242
OMPQ01000013
Alphaproteobacteria
Pseudophaeobacter sp. EL27 [OMPQ]
2821
2737
-
Leu
TAG
[ENA]
¡û
>W1911539299
OMPR01000019
Alphaproteobacteria
Rhodobacteraceae bacterium EL53 [OMPR]
6609
6525
-
Leu
TAG
[ENA]
¡û
>W1810063523
PDUV01000032
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
7419
7503
+
Leu
TAG
[ENA]
¡û
>W1810185199
PKFN01000007
Alphaproteobacteria
Yoonia maritima YPC211 [PKFN]
415883
415967
+
Leu
TAG
[ENA]
¡û
>W1810364894
PVTP01000001
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
190713
190797
+
Leu
TAG
[ENA]
¡û
>W1810400763
PYGJ01000001
Alphaproteobacteria
Shimia abyssi DSM 100673 [PYGJ]
70090
70006
-
Leu
TAG
[ENA]
¡û
>W1810685735
QKZM01000170
Alphaproteobacteria
Planktotalea frisia DSM 23709 [QKZM]
2953
3037
+
Leu
TAG
[ENA]
¡û
>W1810724984
QOCE01000025
Alphaproteobacteria
Phaeobacter gallaeciensis C3M10 [QOCE]
121658
121742
+
Leu
TAG
[ENA]
¡û
>W1810725067
QOCG01000011
Alphaproteobacteria
Loktanella sp. D2R18 [QOCG]
298549
298465
-
Leu
TAG
[ENA]
¡û
>W1511479497
JWIF01000045
Alphaproteobacteria
Halocynthiibacter namhaensis RA2-3 [JWIF]
13909
13825
-
Leu
TAG
[ENA]
¡û
>C121003868
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
1939529
1939445
-
Leu
TAG
-
¡û
>W1610093025
CYSG01000020
Alphaproteobacteria
Phaeobacter sp. CECT 5382 [CYSG]
918
834
-
Leu
TAG
[ENA]
¡û
>W1610094597
CYTW01000002
Alphaproteobacteria
Shimia thalassica CECT 7735 [CYTW]
613020
613104
+
Leu
TAG
[ENA]
¡û
>W1610576138
LAJH01000009
Alphaproteobacteria
Shimia sp. SK013 [LAJH]
626076
625992
-
Leu
TAG
[ENA]
¡û
>W1610630914
LIKT01000020
Alphaproteobacteria
Phaeobacter sp. 11ANDIMAR09 [LIKT]
90760
90844
+
Leu
TAG
[ENA]
¡û
>W1710515177
FNBP01000003
Alphaproteobacteria
Sulfitobacter delicatus [FNBP]
235930
236014
+
Leu
TAG
[ENA]
¡û
>W1710543832
FOAI01000008
Alphaproteobacteria
Roseivivax marinus [FOAI]
39402
39486
+
Leu
TAG
[ENA]
¡û
>W1710559538
FOMS01000006
Alphaproteobacteria
Roseivivax sediminis [FOMS]
279405
279321
-
Leu
TAG
[ENA]
¡û
>W1710565142
FORA01000001
Alphaproteobacteria
Jannaschia pohangensis [FORA]
868543
868459
-
Leu
TAG
[ENA]
¡û
>W1710567744
FOSZ01000001
Alphaproteobacteria
Shimia haliotis [FOSZ]
1014776
1014692
-
Leu
TAG
[ENA]
¡û
>W1710574887
FOYP01000001
Alphaproteobacteria
Yoonia tamlensis [FOYP]
1609370
1609286
-
Leu
TAG
[ENA]
¡û
>W1710588773
FQZQ01000003
Alphaproteobacteria
Shimia gijangensis [FQZQ]
154793
154877
+
Leu
TAG
[ENA]
¡û
>W1710594783
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
1750588
1750504
-
Leu
TAG
[ENA]
¡û
>W1710694500
LAJH01000009
Alphaproteobacteria
Shimia sp. SK013 [LAJH]
626076
625992
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK