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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182475 (92 seq.)
>W1710785489
LJHX01000051
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
10913
10989
+
Asp
GTC
[ENA]
¡û
>W1710857321
LMAF01000001
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
262942
263018
+
Asp
GTC
[ENA]
¡û
>W1710866203
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
792241
792317
+
Asp
GTC
[ENA]
¡û
>W1710879465
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
940556
940632
+
Asp
GTC
[ENA]
¡û
>W1710879466
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
940711
940787
+
Asp
GTC
[ENA]
¡û
>W1710892794
LNED01000009
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
20165
20241
+
Asp
GTC
[ENA]
¡û
>W1711069387
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
170296
170372
+
Asp
GTC
[ENA]
¡û
>W1711220311
LXQI01000007
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
93820
93896
+
Asp
GTC
[ENA]
¡û
>W1711229605
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
176
252
+
Asp
GTC
[ENA]
¡û
>W1711284892
LZRP01000007
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
89626
89702
+
Asp
GTC
[ENA]
¡û
>W1711434806
MINO01000006
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
145889
145813
-
Asp
GTC
[ENA]
¡û
>C171115159
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
824785
824709
-
Asp
GTC
-
¡û
>W131045824
AMRV01000001
Alphaproteobacteria
Pacificimonas flava JLT2015 [AMRV]
190546
190622
+
Asp
GTC
[ENA]
¡û
>W131215047
ATUR01000003
Alphaproteobacteria
Novosphingopyxis baekryungensis DSM 16222 [ATUR]
114349
114273
-
Asp
GTC
[ENA]
¡û
>W131046796
AMSR01000004
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
66810
66886
+
Asp
GTC
[ENA]
¡û
>C027915
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
444155
444231
+
Asp
GTC
[Ensembl]
¡û
>WENV180020626
FTCZ01007635
[FTCZ] metagenome; soil
79
3
-
Asp
GTC
[ENA]
¢þ
>WENV180021864
FTFC01003140
[FTFC] metagenome; soil
80
156
+
Asp
GTC
[ENA]
¢þ
>WENV180022607
FTGL01000098
[FTGL] metagenome; soil
1584
1508
-
Asp
GTC
[ENA]
¢þ
>WENV180023119
FTHL01000099
[FTHL] metagenome; soil
1193
1269
+
Asp
GTC
[ENA]
¢þ
>WENV180024920
FTIL01001900
[FTIL] metagenome; soil
57
133
+
Asp
GTC
[ENA]
¢þ
>WENV180025081
FTIL01081303
[FTIL] metagenome; soil
213
137
-
Asp
GTC
[ENA]
¢þ
>WENV180026157
FTIR01193714
[FTIR] metagenome; soil
145
69
-
Asp
GTC
[ENA]
¢þ
>WENV180026309
FTIT01001333
[FTIT] metagenome; soil
10477
10401
-
Asp
GTC
[ENA]
¢þ
>WENV180026310
FTIT01001333
[FTIT] metagenome; soil
10264
10188
-
Asp
GTC
[ENA]
¢þ
>WENV180029924
FTJL01021601
[FTJL] metagenome; soil
348
424
+
Asp
GTC
[ENA]
¢þ
>WENV181184412
OEKC01000115
[OEKC] metagenome; 1998
5079
5155
+
Asp
GTC
[ENA]
¢þ
>WENV181407124
OGCG01006934
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
936
860
-
Asp
GTC
[ENA]
¢þ
>WENV183670224
ORJL010922771
[ORJL] groundwater metagenome; groundwater
449
525
+
Asp
GTC
[ENA]
¢þ
>WENV183679755
ORMF010101306
[ORMF] groundwater metagenome; groundwater
459
383
-
Asp
GTC
[ENA]
¢þ
>WENV183696504
ORMF012566061
[ORMF] groundwater metagenome; groundwater
2
78
+
Asp
GTC
[ENA]
¢þ
>WENV183750177
PPFU01266882
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2781
2857
+
Asp
GTC
[ENA]
¢þ
>WENV170372995
CETS01154946
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
571
495
-
Asp
GTC
[ENA]
¢þ
>WENV170647338
JQIA01021422
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2526
2450
-
Asp
GTC
[ENA]
¢þ
>WENV170668058
LADL02000596
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
7171
7095
-
Asp
GTC
[ENA]
¢þ
>WENV170668135
LADL02001334
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3036
2960
-
Asp
GTC
[ENA]
¢þ
>WENV170668433
LADL02003825
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
4791
4715
-
Asp
GTC
[ENA]
¢þ
>WENV170711211
LNFM01004023
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20026
20102
+
Asp
GTC
[ENA]
¢þ
>WENV170923820
MDTG01055362
[MDTG] marine metagenome; seawater
2667
2591
-
Asp
GTC
[ENA]
¢þ
>WENV170964719
MRWG01034344
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
136
60
-
Asp
GTC
[ENA]
¢þ
>WENV170990206
MWVZ01264391
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
291
215
-
Asp
GTC
[ENA]
¢þ
>WENV170990207
MWVZ01264391
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
93
17
-
Asp
GTC
[ENA]
¢þ
>WENV170991019
MWWA01094215
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
154
230
+
Asp
GTC
[ENA]
¢þ
>WENV170993746
MWWB01433686
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
133
57
-
Asp
GTC
[ENA]
¢þ
>WENV170993931
MWWC01045629
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
147
71
-
Asp
GTC
[ENA]
¢þ
>C181062165
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1185968
1185892
-
Asp
GTC
-
¡û
>C181068268
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
3560986
3560910
-
Asp
GTC
-
¡û
>C181088851
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
446548
446624
+
Asp
GTC
-
¡û
>C181088902
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
446548
446624
+
Asp
GTC
-
¡û
>C181089229
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
446548
446624
+
Asp
GTC
-
¡û
>C181220323
LT702999
Alphaproteobacteria
Erythrobacter sp. Alg231-14 [LT702999, LT703000]
2743051
2742975
-
Asp
GTC
-
¡û
>C181220342
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
309795
309871
+
Asp
GTC
-
¡û
>C191002569
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
1868777
1868853
+
Asp
GTC
-
¡û
>C191145576
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
444147
444223
+
Asp
GTC
-
¡û
>C191145627
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
444147
444223
+
Asp
GTC
-
¡û
>C191145678
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
444147
444223
+
Asp
GTC
-
¡û
>W09133943
ACQU01000001
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
179845
179921
+
Asp
GTC
[ENA]
¡û
>W1910182403
BJMW01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
24286
24210
-
Asp
GTC
[ENA]
¡û
>C141008816
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
926343
926267
-
Asp
GTC
[Ensembl]
¡û
>W1911532521
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
684758
684834
+
Asp
GTC
[ENA]
¡û
>W1911823525
QZVQ01000010
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
107222
107298
+
Asp
GTC
[ENA]
¡û
>W1911823526
QZVQ01000010
Alphaproteobacteria
Croceibacterium ferulae SX2RGS8 [QZVQ]
107375
107451
+
Asp
GTC
[ENA]
¡û
>SRA1001851
SRR001308.90767
Metagenomic characterization of a wastewater treatment plant (SRP000180)
121
197
+
Asp
GTC
[SRA]
>W1810195455
PKRO01000007
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
110809
110733
-
Asp
GTC
[ENA]
¡û
>W1810503361
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
909552
909628
+
Asp
GTC
[ENA]
¡û
>W1810579392
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
2549087
2549163
+
Asp
GTC
[ENA]
¡û
>W1810594057
QFYQ01000001
Alphaproteobacteria
Phenylobacterium soli LX32 [QFYQ]
2641457
2641533
+
Asp
GTC
[ENA]
¡û
>C151004618
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
926115
926039
-
Asp
GTC
[Ensembl]
¡û
>C151004669
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
926118
926042
-
Asp
GTC
[Ensembl]
¡û
>C10114602
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
924614
924538
-
Asp
GTC
[Ensembl]
¡û
>W1511398359
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
1156748
1156672
-
Asp
GTC
[ENA]
¡û
>W1511398360
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
1156595
1156519
-
Asp
GTC
[ENA]
¡û
>C121003139
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1148693
1148769
+
Asp
GTC
[Ensembl]
¡û
>C121015276
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
925912
925836
-
Asp
GTC
[Ensembl]
¡û
>C161073953
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1260994
1261070
+
Asp
GTC
[Ensembl]
¡û
>W1610071199
BCTW01000016
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
56229
56305
+
Asp
GTC
[ENA]
¡û
>W1610590991
LDRW01000023
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
9907
9831
-
Asp
GTC
[ENA]
¡û
>W1610649295
LJHX01000051
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
10913
10989
+
Asp
GTC
[ENA]
¡û
>W1610719702
LMAF01000001
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
262942
263018
+
Asp
GTC
[ENA]
¡û
>W1610728549
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
792241
792317
+
Asp
GTC
[ENA]
¡û
>W1610741811
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
940556
940632
+
Asp
GTC
[ENA]
¡û
>W1610741812
LMRS01000001
Alphaproteobacteria
Sphingomonas sp. Leaf339 [LMRS]
940711
940787
+
Asp
GTC
[ENA]
¡û
>W1610753060
LNED01000009
Alphaproteobacteria
Sphingomonadales bacterium Ga0077531 [LNED]
20165
20241
+
Asp
GTC
[ENA]
¡û
>W1610909915
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
170296
170372
+
Asp
GTC
[ENA]
¡û
>W1611004783
LXQI01000007
Alphaproteobacteria
Erythrobacter sp. ANT-B3C2 [LXQI]
93820
93896
+
Asp
GTC
[ENA]
¡û
>W1611013475
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
176
252
+
Asp
GTC
[ENA]
¡û
>W1611042677
LZRP01000007
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
89626
89702
+
Asp
GTC
[ENA]
¡û
>W1710068564
BCTW01000016
Alphaproteobacteria
Novosphingobium lentum NBRC 107847 [BCTW]
56229
56305
+
Asp
GTC
[ENA]
¡û
>W1710593922
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
749169
749093
-
Asp
GTC
[ENA]
¡û
>W1710616591
JFKA01000003
Alphaproteobacteria
Thalassospira mesophila [JFKA]
156903
156827
-
Asp
GTC
[ENA]
¡û
>W1710616592
JFKA01000003
Alphaproteobacteria
Thalassospira mesophila [JFKA]
156424
156348
-
Asp
GTC
[ENA]
¡û
>W1710710271
LDRW01000023
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
9907
9831
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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