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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183807 (11 seq.)
>WENV181228583
OFEH01000317
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
546
472
-
fMet
CAT
[ENA]
¢þ
>WENV181406595
OGCG01000596
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
20139
20066
-
fMet
CAT
[ENA]
¢þ
>WENV181407549
OGCG01040354
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
552
626
+
fMet
CAT
[ENA]
¢þ
>C08005569
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
107711
107784
+
Met
CAT
[Ensembl]
¡û
>W09107147
ABFI01000033
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
11341
11268
-
Met
CAT
[ENA]
¡û
>C151003638
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
111601
111675
+
Met
CAT
[Ensembl]
¡û
>C151003682
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
111637
111711
+
Met
CAT
[Ensembl]
¡û
>W10115184
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
148737
148811
+
Met
CAT
[ENA]
¡û
>W11118770
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
148737
148811
+
Met
CAT
[ENA]
¡û
>C131013378
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
111636
111710
+
Met
CAT
[Ensembl]
¡û
>C131013689
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
111598
111672
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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