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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183911 (20 seq.)
>A171000860
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
811321
811395
+
Lys
TTT
-
¡û
>A171001019
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1740613
1740540
-
Lys
TTT
-
¡û
>A171001261
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1157545
1157619
+
Lys
TTT
-
¡û
>A171002210
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1004047
1004121
+
Lys
TTT
-
¡û
>A171004492
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1276557
1276483
-
Lys
TTT
-
¡û
>WENV180317099
OBKJ01021324
[OBKJ] metagenome; hydrothermal vent
110
184
+
Lys
TTT
[ENA]
¢þ
>WENV180332429
OBLD01007588
[OBLD] metagenome; water
225
298
+
Lys
TTT
[ENA]
¢þ
>WENV181212889
OFBU01000764
[OFBU] metagenome; hydrothermal vent
3624
3550
-
Lys
TTT
[ENA]
¢þ
>WENV181214082
OFBW01010328
[OFBW] metagenome; hydrothermal vent
782
856
+
Lys
TTT
[ENA]
¢þ
>WENV181214578
OFBY01002278
[OFBY] metagenome; hydrothermal vent
1771
1845
+
Lys
TTT
[ENA]
¢þ
>WENV181215067
OFBZ01002361
[OFBZ] metagenome; hydrothermal vent
873
947
+
Lys
TTT
[ENA]
¢þ
>WENV181215666
OFCA01006980
[OFCA] metagenome; hydrothermal vent
228
154
-
Lys
TTT
[ENA]
¢þ
>WENV181216150
OFCB01006168
[OFCB] metagenome; hydrothermal vent
1203
1277
+
Lys
TTT
[ENA]
¢þ
>WENV181223891
OFDD01002492
[OFDD] metagenome; hydrothermal vent
106
179
+
Lys
TTT
[ENA]
¢þ
>At0940
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
863816
863889
+
Lys
TTT
[Ensembl]
¡û
>W1910067443
BFAX01000003
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
37031
36958
-
Lys
TTT
[ENA]
¡û
>W1610001107
ACQW01000003
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
83086
83162
+
Lys
TTT
[ENA]
¡û
>W1610001538
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
478884
478957
+
Lys
TTT
[ENA]
¡û
>W1610001639
ADCA01000004
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
38682
38606
-
Lys
TTT
[ENA]
¡û
>W1610004277
AGJL01000001
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
55999
55923
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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