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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183912 (25 seq.)
>A171000855
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
791456
791530
+
Val
TAC
-
¡û
>A171001030
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1499534
1499460
-
Val
TAC
-
¡û
>A171001263
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1178208
1178282
+
Val
TAC
-
¡û
>A171004494
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1258920
1258846
-
Val
TAC
-
¡û
>WENV180275386
OBHT01019276
[OBHT] metagenome; hydrothermal vent
2
76
+
Val
TAC
[ENA]
¢þ
>WENV180288005
OBIL01031306
[OBIL] metagenome; hydrothermal vent
341
267
-
Val
TAC
[ENA]
¢þ
>WENV180317162
OBKJ01035193
[OBKJ] metagenome; hydrothermal vent
233
307
+
Val
TAC
[ENA]
¢þ
>WENV181206670
OFAW01001402
[OFAW] metagenome; hydrothermal vent
1320
1394
+
Val
TAC
[ENA]
¢þ
>WENV181207308
OFAY01010969
[OFAY] metagenome; hydrothermal vent
111
185
+
Val
TAC
[ENA]
¢þ
>WENV181208236
OFBB01000971
[OFBB] metagenome; hydrothermal vent
1315
1241
-
Val
TAC
[ENA]
¢þ
>WENV181212907
OFBU01000998
[OFBU] metagenome; hydrothermal vent
2062
2136
+
Val
TAC
[ENA]
¢þ
>WENV181213443
OFBV01002808
[OFBV] metagenome; hydrothermal vent
1427
1353
-
Val
TAC
[ENA]
¢þ
>WENV181213845
OFBW01001019
[OFBW] metagenome; hydrothermal vent
1672
1598
-
Val
TAC
[ENA]
¢þ
>WENV181214365
OFBX01005290
[OFBX] metagenome; hydrothermal vent
169
95
-
Val
TAC
[ENA]
¢þ
>WENV181214444
OFBY01000222
[OFBY] metagenome; hydrothermal vent
822
748
-
Val
TAC
[ENA]
¢þ
>WENV181215000
OFBZ01000771
[OFBZ] metagenome; hydrothermal vent
1708
1634
-
Val
TAC
[ENA]
¢þ
>WENV181215435
OFCA01000245
[OFCA] metagenome; hydrothermal vent
5305
5379
+
Val
TAC
[ENA]
¢þ
>WENV181216146
OFCB01006117
[OFCB] metagenome; hydrothermal vent
1097
1171
+
Val
TAC
[ENA]
¢þ
>WENV181224735
OFDG01002631
[OFDG] metagenome; hydrothermal vent
1607
1681
+
Val
TAC
[ENA]
¢þ
>At0942
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
883681
883754
+
Val
TAC
[Ensembl]
¡û
>W1610001102
ACQW01000003
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
63220
63296
+
Val
TAC
[ENA]
¡û
>W1610001549
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
719961
720037
+
Val
TAC
[ENA]
¡û
>W1610001641
ADCA01000004
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
18019
17943
-
Val
TAC
[ENA]
¡û
>W1610018092
APMM01000009
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
957
881
-
Val
TAC
[ENA]
¡û
>W1610018626
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
24473
24549
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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