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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183975 (43 seq.)
>W1711129956
LUUM01000248
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
63283
63207
-
Asp
GTC
[ENA]
¡û
>W1711228867
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
25878
25802
-
Asp
GTC
[ENA]
¡û
>W1711475577
MJUX01000011
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
90360
90436
+
Asp
GTC
[ENA]
¡û
>W131163840
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
2353683
2353607
-
Asp
GTC
[ENA]
¡û
>W131218794
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
1382358
1382282
-
Asp
GTC
[ENA]
¡û
>W131186314
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
3740594
3740670
+
Asp
GTC
[ENA]
¡û
>W08008832
ABLP01000001
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
96915
96842
-
Asp
GTC
[ENA]
¡û
>WENV181166931
OEIU01004358
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1878
1802
-
Asp
GTC
[ENA]
¢þ
>W141216012
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
309907
309983
+
Asp
GTC
[ENA]
¡û
>C08001607
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
2740885
2740812
-
Asp
GTC
[Ensembl]
¡û
>WENV170003674
AGTN01414337
[AGTN] bioreactor metagenome; poplar biomass
116
40
-
Asp
GTC
[ENA]
¢þ
>WENV170010981
APMI01037681
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
882
806
-
Asp
GTC
[ENA]
¢þ
>WENV170553113
CXWK01008024
[CXWK] wastewater metagenome; activated sludge
12532
12456
-
Asp
GTC
[ENA]
¢þ
>WENV170714427
LNFM01073002
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1101
1177
+
Asp
GTC
[ENA]
¢þ
>WENV170974363
MTKY01058778
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4938
5014
+
Asp
GTC
[ENA]
¢þ
>C181089626
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
2414232
2414308
+
Asp
GTC
-
¡û
>C191152097
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3585725
3585649
-
Asp
GTC
-
¡û
>C191221055
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
849599
849675
+
Asp
GTC
-
¡û
>W141701399
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
2712129
2712205
+
Asp
GTC
[ENA]
¡û
>W141815697
JQJH01000003
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
119640
119716
+
Asp
GTC
[ENA]
¡û
>W141817287
JQKO01000009
Alphaproteobacteria
Methylocapsa aurea [JQKO]
174297
174221
-
Asp
GTC
[ENA]
¡û
>W141821220
JQNK01000009
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
2307475
2307551
+
Asp
GTC
[ENA]
¡û
>W1911148312
NPET01000006
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
773
697
-
Asp
GTC
[ENA]
¡û
>W1911219089
NRRJ01000002
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
229947
230023
+
Asp
GTC
[ENA]
¡û
>W1911747261
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
1642589
1642513
-
Asp
GTC
[ENA]
¡û
>W1911787994
QYBB01000014
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
99578
99502
-
Asp
GTC
[ENA]
¡û
>W1911787995
QYBB01000014
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
99426
99350
-
Asp
GTC
[ENA]
¡û
>W1911788025
QYBC01000006
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
225295
225219
-
Asp
GTC
[ENA]
¡û
>W1810068790
PDZR01000007
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
137684
137760
+
Asp
GTC
[ENA]
¡û
>W1810330550
PUIV01000002
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
2114
2190
+
Asp
GTC
[ENA]
¡û
>SRA1005384
SRR006907.230203
metagenomic water samples (SRP000427)
90
14
-
Asp
GTC
[SRA]
>SRA1005407
SRR006907.253475
metagenomic water samples (SRP000427)
91
15
-
Asp
GTC
[SRA]
>W1810720676
QNRK01000023
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
54764
54840
+
Asp
GTC
[ENA]
¡û
>W1810887322
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
576307
576383
+
Asp
GTC
[ENA]
¡û
>W10118840
ADVE01000054
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
18567
18491
-
Asp
GTC
[ENA]
¡û
>W11125012
ADVE01000054
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
18567
18491
-
Asp
GTC
[ENA]
¡û
>W11150224
AEVM01000004
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
5845
5769
-
Asp
GTC
[ENA]
¡û
>W121067969
AJTV01000004
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
56633
56557
-
Asp
GTC
[ENA]
¡û
>C131019930
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
3448219
3448143
-
Asp
GTC
[Ensembl]
¡û
>W1610941029
LUUM01000248
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
63283
63207
-
Asp
GTC
[ENA]
¡û
>W1611012784
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
25878
25802
-
Asp
GTC
[ENA]
¡û
>W1710567160
FOSN01000002
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
333648
333724
+
Asp
GTC
[ENA]
¡û
>W1710609839
FYDG01000001
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
692718
692642
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK