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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190132 (17 seq.)
>W1711009563
LQQU01000003
Betaproteobacteria
Crenobacter luteus [LQQU]
99036
99112
+
Val
CAC
[ENA]
¡û
>W1711009565
LQQU01000003
Betaproteobacteria
Crenobacter luteus [LQQU]
99214
99290
+
Val
CAC
[ENA]
¡û
>W1711009611
LQQU01000045
Betaproteobacteria
Crenobacter luteus [LQQU]
64327
64403
+
Val
CAC
[ENA]
¡û
>W131215548
ATVC01000034
Betaproteobacteria
Aquaspirillum serpens DSM 68 [ATVC]
314
390
+
Val
CAC
[ENA]
¡û
>W131230526
AUHR01000012
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
78727
78803
+
Val
CAC
[ENA]
¡û
>W131230540
AUHR01000023
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
13812
13736
-
Val
CAC
[ENA]
¡û
>ENV08001372
ABMW01203971
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
74
1
-
Val
CAC
[ENA]
¡û
>C181058466
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
2351997
2351921
-
Val
CAC
-
¡û
>C181058477
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
832293
832217
-
Val
CAC
-
¡û
>C181058479
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
832107
832031
-
Val
CAC
-
¡û
>C09107063
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
2239828
2239752
-
Val
CAC
[Ensembl]
¡û
>C09107074
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
827334
827258
-
Val
CAC
[Ensembl]
¡û
>C09107076
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
827148
827072
-
Val
CAC
[Ensembl]
¡û
>SRA1001426
SRR001064.261126
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
74
1
-
Val
CAC
[SRA]
>W1610858083
LQQU01000003
Betaproteobacteria
Crenobacter luteus [LQQU]
99036
99112
+
Val
CAC
[ENA]
¡û
>W1610858085
LQQU01000003
Betaproteobacteria
Crenobacter luteus [LQQU]
99214
99290
+
Val
CAC
[ENA]
¡û
>W1610858131
LQQU01000045
Betaproteobacteria
Crenobacter luteus [LQQU]
64327
64403
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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