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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196768 (30 seq.)
>W1710797174
LJSV01000002
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
364052
363976
-
His
GTG
[ENA]
¡û
>W1710893942
LNFG01000055
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
38290
38366
+
His
GTG
[ENA]
¡û
>W1711421724
MHZR01000099
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
13877
13801
-
His
GTG
[ENA]
¡û
>W1711421764
MHZS01000074
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
6827
6903
+
His
GTG
[ENA]
¡û
>W1711709206
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
3011745
3011669
-
His
GTG
[ENA]
¡û
>W1711709263
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
464431
464507
+
His
GTG
[ENA]
¡û
>C171064539
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
2488385
2488461
+
His
GTG
-
¡û
>C171067785
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2747164
2747088
-
His
GTG
-
¡û
>C171105923
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
2847932
2847856
-
His
GTG
-
¡û
>W131242033
BASI01000005
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
516028
515952
-
His
GTG
[ENA]
¡û
>W141055094
AOLV01000010
Alphaproteobacteria
Rubellimicrobium thermophilum DSM 16684 [AOLV]
188598
188522
-
His
GTG
[ENA]
¡û
>W141055772
AOSK01000064
Alphaproteobacteria
Rubellimicrobium mesophilum DSM 19309 [AOSK]
32974
32898
-
His
GTG
[ENA]
¡û
>WENV181413929
OGCK01174345
[OGCK] hot springs metagenome; hot spring sediment
380
456
+
His
GTG
[ENA]
¢þ
>W141279581
JAGK01000018
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
38594
38670
+
His
GTG
[ENA]
¡û
>WENV170710282
LNFM01001453
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
43692
43768
+
His
GTG
[ENA]
¢þ
>W141461715
JFGS01000007
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
27803
27879
+
His
GTG
[ENA]
¡û
>WENV170957839
MKWU01000216
[MKWU] sponge metagenome;
11648
11572
-
His
GTG
[ENA]
¢þ
>W1910574843
JQHS01000004
Alphaproteobacteria
Falsirhodobacter deserti W402 [JQHS]
206397
206473
+
His
GTG
[ENA]
¡û
>W1911696782
QMJY01000077
Alphaproteobacteria
Tabrizicola thermarum YIM 73036 [QMJY]
57752
57828
+
His
GTG
[ENA]
¡û
>W1911787278
QXXQ01000001
Alphaproteobacteria
Gemmobacter lutimaris YJ-T1-11 [QXXQ]
484778
484702
-
His
GTG
[ENA]
¡û
>SRA1002081
SRR001308.232502
Metagenomic characterization of a wastewater treatment plant (SRP000180)
43
119
+
His
GTG
[SRA]
>W1810268893
PRDS01000003
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
167247
167323
+
His
GTG
[ENA]
¡û
>W1810722966
QNVX01000011
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
163406
163482
+
His
GTG
[ENA]
¡û
>W11143058
AEPN01000033
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
315
239
-
His
GTG
[ENA]
¡û
>C161001439
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
1144877
1144953
+
His
GTG
[Ensembl]
¡û
>C161087742
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3594396
3594320
-
His
GTG
-
¡û
>C161087791
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
3558894
3558818
-
His
GTG
[Ensembl]
¡û
>W1610661131
LJSV01000002
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA12 [LJSV]
364052
363976
-
His
GTG
[ENA]
¡û
>W1610754208
LNFG01000055
Alphaproteobacteria
Rhizobiales bacterium Ga0077555 [LNFG]
38290
38366
+
His
GTG
[ENA]
¡û
>W1710595084
FSRS01000001
Alphaproteobacteria
Rhodovulum sp. ES.010 [FSRS]
5861
5937
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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