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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197278 (53 seq.)
>W1711751201
MUNO01000010
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
107392
107316
-
Met
CAT
[ENA]
¡û
>W1712049923
NFUT01000001
Betaproteobacteria
Hydrogenophaga sp. IBVHS2 [NFUT]
42735
42659
-
Met
CAT
[ENA]
¡û
>PL171000247
CP000531
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 plasmid:pPNAP02
143245
143169
-
Met
CAT
[ENA]
¡û
>PL171000248
CP000532
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 plasmid:pPNAP03
141203
141279
+
Met
CAT
[ENA]
¡û
>PL171000249
CP000533
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 plasmid:pPNAP04
112170
112094
-
Met
CAT
[ENA]
¡û
>C017282
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
343179
343255
+
Met
CAT
[Ensembl]
¡û
>C017327
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
512117
512193
+
Met
CAT
[Ensembl]
¡û
>WENV180694920
OCZS012826118
[OCZS] soil metagenome; soil
95
171
+
fMet
CAT
[ENA]
¢þ
>WENV181046943
ODXX01030415
[ODXX] human metagenome; G_DNA_Buccal mucosa
168
244
+
fMet
CAT
[ENA]
¢þ
>WENV181369028
OFQN01010965
[OFQN] freshwater metagenome; Freshwater Lake
415
339
-
fMet
CAT
[ENA]
¢þ
>WENV181369496
OFQP01004565
[OFQP] freshwater metagenome; Freshwater Lake
1350
1274
-
fMet
CAT
[ENA]
¢þ
>WENV181370081
OFQR01012284
[OFQR] freshwater metagenome; Freshwater Lake
509
585
+
fMet
CAT
[ENA]
¢þ
>W141188725
AYMW01000003
Betaproteobacteria
Betaproteobacteria bacterium MOLA814 [AYMW]
583375
583299
-
Met
CAT
[ENA]
¡û
>C08007641
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
512117
512193
+
Met
CAT
[Ensembl]
¡û
>W141266001
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
1658469
1658393
-
Met
CAT
[ENA]
¡û
>WENV183621017
OOFT01002432
[OOFT] marine metagenome; sea ice
1688
1764
+
fMet
CAT
[ENA]
¢þ
>WENV183679328
ORMF010047949
[ORMF] groundwater metagenome; groundwater
146
222
+
fMet
CAT
[ENA]
¢þ
>WENV170018714
BBPD01000480
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
272
196
-
Met
CAT
[ENA]
¢þ
>WENV170559286
CXWL01117778
[CXWL] groundwater metagenome; biofilm material
879
955
+
Met
CAT
[ENA]
¢þ
>WENV170612874
FUWD012715508
[FUWD] metagenome; unknown
48
124
+
Met
CAT
[ENA]
¢þ
>WENV170712585
LNFM01015220
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2746
2822
+
Met
CAT
[ENA]
¢þ
>WENV170712708
LNFM01016829
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7428
7504
+
Met
CAT
[ENA]
¢þ
>WENV170712714
LNFM01016928
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8416
8340
-
Met
CAT
[ENA]
¢þ
>WENV170713056
LNFM01023114
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8091
8015
-
Met
CAT
[ENA]
¢þ
>WENV170713965
LNFM01048630
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
452
528
+
Met
CAT
[ENA]
¢þ
>C191073191
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
950445
950369
-
Met
CAT
-
¡û
>W141565115
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
3726441
3726365
-
Met
CAT
[ENA]
¡û
>W141695477
JMDZ01000008
Betaproteobacteria
Polaromonas glacialis [JMDZ]
577987
577911
-
Met
CAT
[ENA]
¡û
>W141695489
JMDZ01000017
Betaproteobacteria
Polaromonas glacialis [JMDZ]
29061
28985
-
Met
CAT
[ENA]
¡û
>W141695490
JMDZ01000031
Betaproteobacteria
Polaromonas glacialis [JMDZ]
14352
14428
+
Met
CAT
[ENA]
¡û
>W141816788
JQKD01000006
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
24116
24040
-
Met
CAT
[ENA]
¡û
>W09101612
AAFQ02000004
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
124894
124970
+
Met
CAT
[ENA]
¡û
>W09104852
AANM01000001
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
422898
422974
+
Met
CAT
[ENA]
¡û
>W09104853
AANM01000001
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
477744
477668
-
Met
CAT
[ENA]
¡û
>W09104867
AANM01000010
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
108364
108288
-
Met
CAT
[ENA]
¡û
>W09104889
AANM01000024
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
6667
6743
+
Met
CAT
[ENA]
¡û
>W1910699893
MERZ01000331
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
31842
31766
-
Met
CAT
[ENA]
¡û
>W1910859511
NBZV01000026
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
5740
5664
-
Met
CAT
[ENA]
¡û
>W1910859548
NBZW01000020
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
6406
6330
-
Met
CAT
[ENA]
¡û
>W1911390911
NWBQ01000022
Betaproteobacteria
Macromonas bipunctata DSM 12705 [NWBQ]
47989
48065
+
Met
CAT
[ENA]
¡û
>SRA1000028
SRR000283.5990
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
75
1
-
Met
CAT
[SRA]
>SRA1003262
SRR002326.349191
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
109
185
+
Met
CAT
[SRA]
>SRA1004189
SRR002328.190446
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
109
33
-
Met
CAT
[SRA]
>SRA1004238
SRR002328.216529
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
130
206
+
Met
CAT
[SRA]
>SRA1004304
SRR002328.258734
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
188
264
+
Met
CAT
[SRA]
>C161029946
CP010951
Betaproteobacteria
Ramlibacter tataouinensis 5-10 [CP010951]
1880644
1880568
-
Met
CAT
[Ensembl]
¡û
>WENV058506
AACY023331432
Marine microbial communities from Global Ocean Sampling (GOS)
430
354
-
Met
CAT
[ENA]
>W121084918
AKIV01000065
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
75091
75167
+
Met
CAT
[ENA]
¡û
>W1610076220
BCYO01000029
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
5686
5610
-
Met
CAT
[ENA]
¡û
>W1710074035
BCYO01000029
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
5686
5610
-
Met
CAT
[ENA]
¡û
>W1710523411
FNHX01000009
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
75146
75222
+
Met
CAT
[ENA]
¡û
>W1710557395
FOKZ01000008
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
56698
56622
-
Met
CAT
[ENA]
¡û
>W1710578310
FPBM01000005
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
151803
151727
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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