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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198127 (8 seq.)
>WENV170684919
LFRM01064137
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
435
359
-
Glu
TTC
[ENA]
¢þ
>C161066983
CP014140
Bacillota
Aneurinibacillus sp. XH2 Xh2 [CP014140]
3543244
3543168
-
Glu
TTC
[Ensembl]
¡û
>C161066991
CP014140
Bacillota
Aneurinibacillus sp. XH2 Xh2 [CP014140]
3485896
3485820
-
Glu
TTC
[Ensembl]
¡û
>C161067003
CP014140
Bacillota
Aneurinibacillus sp. XH2 Xh2 [CP014140]
3459982
3459906
-
Glu
TTC
[Ensembl]
¡û
>C161067020
CP014140
Bacillota
Aneurinibacillus sp. XH2 Xh2 [CP014140]
3327821
3327745
-
Glu
TTC
[Ensembl]
¡û
>C161067038
CP014140
Bacillota
Aneurinibacillus sp. XH2 Xh2 [CP014140]
3056532
3056456
-
Glu
TTC
[Ensembl]
¡û
>C161067056
CP014140
Bacillota
Aneurinibacillus sp. XH2 Xh2 [CP014140]
2821542
2821466
-
Glu
TTC
[Ensembl]
¡û
>W1710517273
FNDE01000059
Bacillota
Aneurinibacillus thermoaerophilus [FNDE]
9794
9870
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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