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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198183 (34 seq.)
>w010189
AAKQ01000006
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
16618
16696
+
Met
CAT
[ENA]
¡û
>C08011032
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
294930
295006
+
Met
CAT
[Ensembl]
¡û
>WENV170675643
LDZP01000174
[LDZP] terrestrial metagenome; oil reservoir sample I1
47897
47973
+
Met
CAT
[ENA]
¢þ
>WENV170685975
LFRM01118837
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
76426
76350
-
Met
CAT
[ENA]
¢þ
>WENV170716479
LSQX01000825
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2511
2587
+
Met
CAT
[ENA]
¢þ
>WENV170726836
LSQX01395763
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11250
11326
+
Met
CAT
[ENA]
¢þ
>C191108147
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
61883
61807
-
Met
CAT
-
¡û
>W09133514
ACPF01000002
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
20712
20788
+
Met
CAT
[ENA]
¡û
>W09135044
ACVH01000010
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
44049
44125
+
Met
CAT
[ENA]
¡û
>W09135145
ACVK01000004
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
77578
77654
+
Met
CAT
[ENA]
¡û
>C151045310
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
2089330
2089254
-
Met
CAT
[Ensembl]
¡û
>W10105950
ACXY01000026
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20675
20751
+
Met
CAT
[ENA]
¡û
>C10113394
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
2169027
2168951
-
Met
CAT
[Ensembl]
¡û
>C10113448
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
2058612
2058536
-
Met
CAT
[Ensembl]
¡û
>W11108273
ACXY01000026
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20675
20751
+
Met
CAT
[ENA]
¡û
>W1511275103
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
768086
768162
+
Met
CAT
[ENA]
¡û
>C11122459
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
290347
290423
+
Met
CAT
[Ensembl]
¡û
>C11122721
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
2184767
2184691
-
Met
CAT
[Ensembl]
¡û
>C11123245
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2477335
2477259
-
Met
CAT
[Ensembl]
¡û
>W11152690
AEYS01000042
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1247
1171
-
Met
CAT
[ENA]
¡û
>W11152698
AEYS01000277
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
109
33
-
Met
CAT
[ENA]
¡û
>C161076037
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
2940177
2940101
-
Met
CAT
[Ensembl]
¡û
>C161076085
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
3032425
3032349
-
Met
CAT
[Ensembl]
¡û
>W1610043672
BAZY01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30964
31040
+
Met
CAT
[ENA]
¡û
>W1610043693
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
79197
79273
+
Met
CAT
[ENA]
¡û
>W121068087
AJUD01000007
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
194316
194240
-
Met
CAT
[ENA]
¡û
>C131011919
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2878867
2878791
-
Met
CAT
-
¡û
>W1610605799
LFSH01000038
Bacillota
Clostridiales bacterium DTU070 [LFSH]
76426
76350
-
Met
CAT
[ENA]
¡û
>W1710040832
BAZY01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30964
31040
+
Met
CAT
[ENA]
¡û
>W1710040853
BAZZ01000001
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
79197
79273
+
Met
CAT
[ENA]
¡û
>W1710515307
FNBS01000016
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
12793
12717
-
Met
CAT
[ENA]
¡û
>W1710560391
FONI01000055
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
7145
7069
-
Met
CAT
[ENA]
¡û
>W1710583312
FQUR01000011
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
153749
153825
+
Met
CAT
[ENA]
¡û
>W1710727086
LFSH01000038
Bacillota
Clostridiales bacterium DTU070 [LFSH]
76426
76350
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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