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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198943 (53 seq.)
>W1710809085
LKEF01000020
Gammaproteobacteria
Pseudomonas fluorescens ICMP 11288 [LKEF]
58530
58606
+
Met
CAT
[ENA]
¡û
>W1710865419
LMGQ01000023
Gammaproteobacteria
Pseudomonas sp. Root569 [LMGQ]
55905
55981
+
Met
CAT
[ENA]
¡û
>W131184802
ARTE01000010
Gammaproteobacteria
gamma proteobacterium SCGC AAA076-P09 [ARTE]
2258
2182
-
Met
CAT
[ENA]
¡û
>W131051022
AMXG01000023
Gammaproteobacteria
Pseudomonas sp. PAMC 26793 [AMXG]
59011
59087
+
Met
CAT
[ENA]
¡û
>W131173956
ARIC01000048
Gammaproteobacteria
Thioalkalivibrio sp. ALgr3 [ARIC]
48627
48703
+
Met
CAT
[ENA]
¡û
>W131175104
ARIZ01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALJ24 [ARIZ]
125300
125376
+
Met
CAT
[ENA]
¡û
>W131177027
ARKM01000069
Gammaproteobacteria
Thioalkalivibrio sp. ALE23 [ARKM]
330977
330901
-
Met
CAT
[ENA]
¡û
>W131178290
ARLL01000057
Gammaproteobacteria
Thioalkalivibrio sp. ALE11 [ARLL]
12273
12197
-
Met
CAT
[ENA]
¡û
>W131178695
ARLT01000020
Gammaproteobacteria
Thioalkalivibrio sp. ALE10 [ARLT]
299900
299976
+
Met
CAT
[ENA]
¡û
>W131178747
ARLU01000032
Gammaproteobacteria
Thioalkalivibrio sp. ALE20 [ARLU]
23104
23028
-
Met
CAT
[ENA]
¡û
>W131178871
ARLX01000023
Gammaproteobacteria
Thioalkalivibrio sp. ALE18 [ARLX]
289726
289802
+
Met
CAT
[ENA]
¡û
>W131221228
AUAG01000018
Gammaproteobacteria
Thioalkalivibrio sp. ALE19 [AUAG]
42159
42083
-
Met
CAT
[ENA]
¡û
>WENV180104474
OAPC01011782
[OAPC] marine metagenome; na
413
337
-
Ile2
CAT
[ENA]
¢þ
>WENV180280412
OBHY01003836
[OBHY] human gut metagenome; Tissue from the tricuspid valve
411
487
+
Ile2
CAT
[ENA]
¢þ
>WENV180280535
OBHZ01004060
[OBHZ] human gut metagenome; Vulva exsudate
206
282
+
Ile2
CAT
[ENA]
¢þ
>WENV180363691
OBNZ01000314
[OBNZ] marine metagenome; ENVO:00002010
1856
1932
+
Ile2
CAT
[ENA]
¢þ
>WENV180366954
OBOE01000758
[OBOE] marine metagenome; ENVO:00002010
331
407
+
Ile2
CAT
[ENA]
¢þ
>WENV180390619
OBPL01003379
[OBPL] marine metagenome; Sterivex filter
176
252
+
Ile2
CAT
[ENA]
¢þ
>WENV180393173
OBPQ01001058
[OBPQ] marine metagenome; polypropylene bottle
564
640
+
Ile2
CAT
[ENA]
¢þ
>WENV180396849
OBPW01015048
[OBPW] marine metagenome; seawater
245
169
-
Ile2
CAT
[ENA]
¢þ
>WENV180397407
OBPY01001807
[OBPY] marine metagenome; Mesotrophic water
49
125
+
Ile2
CAT
[ENA]
¢þ
>WENV180398466
OBQA01032453
[OBQA] marine metagenome; PVDF and polycarbonate filters
255
179
-
Ile2
CAT
[ENA]
¢þ
>WENV180587404
OCOO01002041
[OCOO] marine metagenome; seawater
1
77
+
Ile2
CAT
[ENA]
¢þ
>WENV180587518
OCOO01007679
[OCOO] marine metagenome; seawater
1
77
+
Ile2
CAT
[ENA]
¢þ
>WENV180635526
OCRD01059125
[OCRD] marine metagenome; seawater
113
37
-
Ile2
CAT
[ENA]
¢þ
>WENV180636286
OCRF01000037
[OCRF] marine metagenome; niskin bottle
4655
4731
+
Ile2
CAT
[ENA]
¢þ
>WENV182565941
OJEI01002873
[OJEI] seawater metagenome; Sea water
1707
1631
-
Ile2
CAT
[ENA]
¢þ
>WENV183635971
OOJA01004077
[OOJA] human gut metagenome; Lung tissue
838
914
+
Ile2
CAT
[ENA]
¢þ
>WENV170112975
CENF01024003
[CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2263
2339
+
Met
CAT
[ENA]
¢þ
>WENV170127361
CENP01207394
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
307
383
+
Met
CAT
[ENA]
¢þ
>WENV170164097
CEOM01201166
[CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
567
643
+
Met
CAT
[ENA]
¢þ
>WENV170299457
CESG01035852
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210
286
+
Met
CAT
[ENA]
¢þ
>WENV170600974
FUWD010150774
[FUWD] metagenome; unknown
160
84
-
Met
CAT
[ENA]
¢þ
>WENV170604806
FUWD010429482
[FUWD] metagenome; unknown
418
342
-
Met
CAT
[ENA]
¢þ
>WENV170772282
LXNI01020656
[LXNI] sponge metagenome; marine sponge reef
365
441
+
Met
CAT
[ENA]
¢þ
>WENV170815449
MDSX01010362
[MDSX] marine metagenome; seawater
86
10
-
Met
CAT
[ENA]
¢þ
>WENV170818437
MDSX01071506
[MDSX] marine metagenome; seawater
108
32
-
Met
CAT
[ENA]
¢þ
>WENV170834728
MDSZ01101902
[MDSZ] marine metagenome; seawater
2463
2387
-
Met
CAT
[ENA]
¢þ
>WENV170866516
MDTB01134347
[MDTB] marine metagenome; seawater
496
420
-
Met
CAT
[ENA]
¢þ
>WENV170872220
MDTB01215688
[MDTB] marine metagenome; seawater
54683
54607
-
Met
CAT
[ENA]
¢þ
>WENV170895505
MDTD01080313
[MDTD] marine metagenome; seawater
1870
1794
-
Met
CAT
[ENA]
¢þ
>WENV170928548
MDTG01135545
[MDTG] marine metagenome; seawater
14986
15062
+
Met
CAT
[ENA]
¢þ
>WENV170960163
MKWU01017618
[MKWU] sponge metagenome;
2253
2326
+
Met
CAT
[ENA]
¢þ
>C181213036
LS483433
Gammaproteobacteria
Pseudomonas mucidolens NCTC8068 [LS483433]
5260920
5260996
+
Met
CAT
-
¡û
>C191053445
CP027730
Gammaproteobacteria
Pseudomonas sp. R3-52-08 [CP027730]
5381767
5381843
+
Met
CAT
-
¡û
>C191055220
CP027757
Gammaproteobacteria
Pseudomonas synxantha R2-4-08W [CP027757]
5619240
5619316
+
Met
CAT
-
¡û
>C191055287
CP027758
Gammaproteobacteria
Pseudomonas synxantha R2-54-08W [CP027758]
5698074
5698150
+
Met
CAT
-
¡û
>W1910636793
LPNO01000053
Gammaproteobacteria
Pseudomonas sp. ATCC PTA-122608 [LPNO]
195823
195747
-
Met
CAT
[ENA]
¡û
>C151077476
CP011117
Gammaproteobacteria
Pseudomonas synxantha LBUM223 [CP011117]
2778937
2779013
+
Met
CAT
[Ensembl]
¡û
>WENV045440
AACY022517192
Marine microbial communities from Global Ocean Sampling (GOS)
540
464
-
Met
CAT
[ENA]
>W1610673191
LKEF01000020
Gammaproteobacteria
Pseudomonas fluorescens ICMP 11288 [LKEF]
58530
58606
+
Met
CAT
[ENA]
¡û
>W1610727765
LMGQ01000023
Gammaproteobacteria
Pseudomonas sp. Root569 [LMGQ]
55905
55981
+
Met
CAT
[ENA]
¡û
>W1710076222
BDAH01000015
Gammaproteobacteria
Pseudomonas mucidolens NBRC 103159 [BDAH]
55441
55517
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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