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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20378 (9 seq.)
>WENV180013946
FPIC01013088
[FPIC] soil metagenome; Soil
3573
3483
-
Ser
GGA
[ENA]
¢þ
>WENV180014532
FQKF010037311
[FQKF] soil metagenome; Soil
9743
9833
+
Ser
GGA
[ENA]
¢þ
>WENV181226140
OFDK01000088
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
3059
3149
+
Ser
GGA
[ENA]
¢þ
>W1910573557
JPMG01000025
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
4515
4605
+
Ser
GGA
[ENA]
¡û
>W1910573568
JPMH01000006
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
8193
8103
-
Ser
GGA
[ENA]
¡û
>W1511355465
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
89958
89868
-
Ser
GGA
[ENA]
¡û
>C161034999
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
486649
486559
-
Ser
GGA
[Ensembl]
¡û
>C161071267
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
991488
991578
+
Ser
GGA
[Ensembl]
¡û
>W1710517604
FNDL01000017
Thermotogota
Fervidobacterium changbaicum [FNDL]
19478
19388
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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