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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.204522 (111 seq.)
>W1711029555
LRFG01000007
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
4190
4114
-
Ile
GAT
[ENA]
¡û
>W1711047330
LROY01000001
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
1403191
1403267
+
Ile
GAT
[ENA]
¡û
>W1711047338
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
341954
342030
+
Ile
GAT
[ENA]
¡û
>W1711268625
LZDE01000003
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
1
77
+
Ile
GAT
[ENA]
¡û
>C171030140
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
1538785
1538861
+
Ile
GAT
-
¡û
>C171030147
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
1657326
1657402
+
Ile
GAT
-
¡û
>C171030149
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
1663189
1663265
+
Ile
GAT
-
¡û
>C171030155
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
2385054
2385130
+
Ile
GAT
-
¡û
>C171092396
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
2207514
2207590
+
Ile
GAT
-
¡û
>C171092430
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
236990
236914
-
Ile
GAT
-
¡û
>C171097770
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
3774242
3774166
-
Ile
GAT
-
¡û
>C171097778
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
3407215
3407139
-
Ile
GAT
-
¡û
>C171097782
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
2902129
2902053
-
Ile
GAT
-
¡û
>C171103062
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
1012428
1012504
+
Ile
GAT
-
¡û
>C171103069
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
2571903
2571979
+
Ile
GAT
-
¡û
>C171118524
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
2228080
2228004
-
Ile
GAT
-
¡û
>C171118532
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
2046033
2045957
-
Ile
GAT
-
¡û
>W131168373
ARDZ01000006
Gammaproteobacteria
Dasania marina DSM 21967 [ARDZ]
205917
205841
-
Ile
GAT
[ENA]
¡û
>W131168380
ARDZ01000007
Gammaproteobacteria
Dasania marina DSM 21967 [ARDZ]
1350
1274
-
Ile
GAT
[ENA]
¡û
>W131168386
ARDZ01000016
Gammaproteobacteria
Dasania marina DSM 21967 [ARDZ]
48687
48763
+
Ile
GAT
[ENA]
¡û
>W131174993
ARIX01000006
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
26207
26131
-
Ile
GAT
[ENA]
¡û
>W131175002
ARIX01000012
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
136892
136968
+
Ile
GAT
[ENA]
¡û
>W131175012
ARIX01000015
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
2326
2402
+
Ile
GAT
[ENA]
¡û
>W131175022
ARIX01000017
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
3546
3470
-
Ile
GAT
[ENA]
¡û
>W131230655
AUHU01000007
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
275542
275466
-
Ile
GAT
[ENA]
¡û
>W131230667
AUHU01000016
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
3957
3881
-
Ile
GAT
[ENA]
¡û
>W131230669
AUHU01000018
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
33307
33383
+
Ile
GAT
[ENA]
¡û
>W131230671
AUHU01000020
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
14103
14027
-
Ile
GAT
[ENA]
¡û
>C020890
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
3213234
3213158
-
Ile
GAT
[Ensembl]
¡û
>w021584
AAVT01000006
Gammaproteobacteria
marine gamma proteobacterium HTCC2143 [AAVT]
1520
1598
+
Ile
GAT
[ENA]
¡û
>WENV180023597
FTIC01095814
[FTIC] metagenome; soil
301
377
+
Ile
GAT
[ENA]
¢þ
>WENV180028982
FTJI01001046
[FTJI] metagenome; soil
3190
3114
-
Ile
GAT
[ENA]
¢þ
>WENV180029172
FTJI01111177
[FTJI] metagenome; soil
599
523
-
Ile
GAT
[ENA]
¢þ
>WENV180029226
FTJI01229967
[FTJI] metagenome; soil
551
475
-
Ile
GAT
[ENA]
¢þ
>WENV180030830
FTJN01143330
[FTJN] metagenome; soil
3356
3432
+
Ile
GAT
[ENA]
¢þ
>WENV180030953
FTJN01720006
[FTJN] metagenome; soil
421
345
-
Ile
GAT
[ENA]
¢þ
>WENV180033470
FTKK01000960
[FTKK] metagenome; soil
2609
2533
-
Ile
GAT
[ENA]
¢þ
>WENV180034506
FTKR01001041
[FTKR] metagenome; soil
3190
3114
-
Ile
GAT
[ENA]
¢þ
>WENV180034695
FTKR01111921
[FTKR] metagenome; soil
599
523
-
Ile
GAT
[ENA]
¢þ
>WENV180034769
FTKR01257597
[FTKR] metagenome; soil
551
475
-
Ile
GAT
[ENA]
¢þ
>WENV180051395
MPLU02211063
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
614
538
-
Ile
GAT
[ENA]
¢þ
>WENV180102155
OAOX01065684
[OAOX] marine metagenome; l
83
159
+
Ile
GAT
[ENA]
¢þ
>WENV180390769
OBPL01021357
[OBPL] marine metagenome; Sterivex filter
217
293
+
Ile
GAT
[ENA]
¢þ
>WENV180637231
OCRG01003657
[OCRG] marine metagenome; seawater
336
412
+
Ile
GAT
[ENA]
¢þ
>WENV181092526
OEBK01005866
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
257
333
+
Ile
GAT
[ENA]
¢þ
>W141135604
AWEP01000011
Gammaproteobacteria
Marinimicrobium sp. LS-A18 [AWEP]
4180
4104
-
Ile
GAT
[ENA]
¡û
>WENV181400746
OFSF01021675
[OFSF] wastewater metagenome; Exp Tend VB 100WW
701
625
-
Ile
GAT
[ENA]
¢þ
>WENV182542497
OJAY01004539
[OJAY] seawater metagenome; Sea water
1472
1396
-
Ile
GAT
[ENA]
¢þ
>WENV182580198
OJGU01013807
[OJGU] seawater metagenome; Sea water
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV183057569
OLHL01010320
[OLHL] seawater metagenome; Sea water
944
868
-
Ile
GAT
[ENA]
¢þ
>C08003209
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
808853
808929
+
Ile
GAT
[Ensembl]
¡û
>C08003216
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
1055909
1055985
+
Ile
GAT
[Ensembl]
¡û
>C08003218
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
1061608
1061684
+
Ile
GAT
[Ensembl]
¡û
>WENV183806382
PVBE011113539
[PVBE] marine metagenome; water
739
663
-
Ile
GAT
[ENA]
¢þ
>WENV170015687
AZII01003123
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
350
274
-
Ile
GAT
[ENA]
¢þ
>WENV170213700
CEPX01045020
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
112
188
+
Ile
GAT
[ENA]
¢þ
>WENV170310652
CESM01058613
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
128
204
+
Ile
GAT
[ENA]
¢þ
>WENV170314671
CESO01019686
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
582
506
-
Ile
GAT
[ENA]
¢þ
>WENV170353423
CETI01019082
[CETI] marine metagenome genome assembly TARA_111_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
455
531
+
Ile
GAT
[ENA]
¢þ
>W141425808
JELR01000004
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
2619
2695
+
Ile
GAT
[ENA]
¡û
>W141425816
JELR01000008
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
236
312
+
Ile
GAT
[ENA]
¡û
>WENV170599723
FUWD010088340
[FUWD] metagenome; unknown
174
98
-
Ile
GAT
[ENA]
¢þ
>WENV170780836
MAAB01025249
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1008
932
-
Ile
GAT
[ENA]
¢þ
>C181173106
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
575041
575117
+
Ile
GAT
-
¡û
>C181173113
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
690681
690757
+
Ile
GAT
-
¡û
>C181173139
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
4797994
4797918
-
Ile
GAT
-
¡û
>C181173147
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
3697046
3696970
-
Ile
GAT
-
¡û
>W141565065
JIBG01000008
Gammaproteobacteria
Teredinibacter turnerae 1133Y.S.0a.04 [JIBG]
396876
396952
+
Ile
GAT
[ENA]
¡û
>W09100562
AABI03000002
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
885546
885470
-
Ile
GAT
[ENA]
¡û
>W1910270365
FQLF01000002
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
2467115
2467191
+
Ile
GAT
[ENA]
¡û
>W1910270385
FQLF01000005
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
841189
841113
-
Ile
GAT
[ENA]
¡û
>W1910270394
FQLF01000005
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
706
630
-
Ile
GAT
[ENA]
¡û
>W1910796168
MSCH01000001
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
14
90
+
Ile
GAT
[ENA]
¡û
>W1910796170
MSCH01000002
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
14
90
+
Ile
GAT
[ENA]
¡û
>W1910796174
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
832201
832277
+
Ile
GAT
[ENA]
¡û
>W1910796177
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
1019557
1019633
+
Ile
GAT
[ENA]
¡û
>W1910796196
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2226506
2226582
+
Ile
GAT
[ENA]
¡û
>W1910796211
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
3552410
3552334
-
Ile
GAT
[ENA]
¡û
>W1910796237
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
361459
361383
-
Ile
GAT
[ENA]
¡û
>W1911138236
NOXC01000045
Gammaproteobacteria
Cellvibrionaceae bacterium AOL6 [NOXC]
90
166
+
Ile
GAT
[ENA]
¡û
>W1810270692
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
1867086
1867162
+
Ile
GAT
[ENA]
¡û
>W1810270694
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
2272740
2272816
+
Ile
GAT
[ENA]
¡û
>W1810270704
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
780780
780704
-
Ile
GAT
[ENA]
¡û
>W1810270709
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
3380
3304
-
Ile
GAT
[ENA]
¡û
>W1810604697
QGMQ01000015
Gammaproteobacteria
Marinimicrobium alkaliphilum SW121 [QGMQ]
3649
3573
-
Ile
GAT
[ENA]
¡û
>C10113869
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
1122081
1122157
+
Ile
GAT
[Ensembl]
¡û
>C10113887
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
5010203
5010127
-
Ile
GAT
[Ensembl]
¡û
>W1510865152
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
4653061
4652985
-
Ile
GAT
[ENA]
¡û
>W1510865160
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
4249411
4249335
-
Ile
GAT
[ENA]
¡û
>W1511502010
JXCJ01000001
Gammaproteobacteria
Gilvimarinus agarilyticus JEA5 [JXCJ]
1134817
1134893
+
Ile
GAT
[ENA]
¡û
>W1511502017
JXCJ01000001
Gammaproteobacteria
Gilvimarinus agarilyticus JEA5 [JXCJ]
1279671
1279747
+
Ile
GAT
[ENA]
¡û
>W1511502042
JXCJ01000001
Gammaproteobacteria
Gilvimarinus agarilyticus JEA5 [JXCJ]
3193476
3193400
-
Ile
GAT
[ENA]
¡û
>W1511573619
LANC01000003
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
669
745
+
Ile
GAT
[ENA]
¡û
>C161078673
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
561065
561141
+
Ile
GAT
[Ensembl]
¡û
>C161078680
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
673589
673665
+
Ile
GAT
[Ensembl]
¡û
>C161078699
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
2355665
2355589
-
Ile
GAT
[Ensembl]
¡û
>W1610610073
LFYV01000056
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
3958
3882
-
Ile
GAT
[ENA]
¡û
>W1610877823
LRFG01000007
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
4190
4114
-
Ile
GAT
[ENA]
¡û
>W1610888459
LROY01000001
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
1403191
1403267
+
Ile
GAT
[ENA]
¡û
>W1610888467
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
341954
342030
+
Ile
GAT
[ENA]
¡û
>ENV001447
AY932826
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002962
AY934394
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002969
AY934399
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002977
AY934403
Environmental sample from ENV division of INSDC
116
194
+
Ile
GAT
[ENA]
>ENV002997
AY934414
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV002999
AY934415
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV003001
AY934416
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>ENV003007
AY934419
Environmental sample from ENV division of INSDC
211
289
+
Ile
GAT
[ENA]
>ENV003017
AY934425
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>W1710520101
FNFH01000014
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
82
6
-
Ile
GAT
[ENA]
¡û
>W1710731418
LFYV01000056
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
3958
3882
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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