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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20849 (52 seq.)
>W1711143163
LVHD01000162
Alphaproteobacteria
Acetobacter malorum [LVHD]
1858
1768
-
Ser
GGA
[ENA]
¡û
>C171036170
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
1924620
1924530
-
Ser
GGA
-
¡û
>C171120266
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
1755527
1755617
+
Ser
GGA
-
¡û
>C171120324
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
1773313
1773403
+
Ser
GGA
-
¡û
>C171126422
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
1912925
1913015
+
Ser
GGA
-
¡û
>WENV180056499
MPLW02036463
[MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter
870
958
+
Ser
GGA
[ENA]
¢þ
>WENV180093414
MPMF02319152
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
114
202
+
Ser
GGA
[ENA]
¢þ
>WENV181403540
OFUB01002006
[OFUB] marine metagenome; seawater
640
552
-
Ser
GGA
[ENA]
¢þ
>W141428619
JEOA01000008
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
96115
96025
-
Ser
GGA
[ENA]
¡û
>WENV170662995
JYMV01000601
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
126
38
-
Ser
GGA
[ENA]
¢þ
>WENV170663206
JYMV01003089
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
4891
4979
+
Ser
GGA
[ENA]
¢þ
>WENV170663207
JYMV01003090
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
4891
4979
+
Ser
GGA
[ENA]
¢þ
>C181088294
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
2073599
2073689
+
Ser
GGA
-
¡û
>C181193656
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
2241931
2241841
-
Ser
GGA
-
¡û
>C191100497
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
823623
823713
+
Ser
GGA
-
¡û
>W1910007930
BDER01000062
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
73576
73486
-
Ser
GGA
[ENA]
¡û
>W1910008038
BDET01000071
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
18030
17940
-
Ser
GGA
[ENA]
¡û
>W1910008196
BDEW01000071
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
7675
7585
-
Ser
GGA
[ENA]
¡û
>W1910008348
BDEZ01000044
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
15781
15691
-
Ser
GGA
[ENA]
¡û
>C141012387
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
1087393
1087303
-
Ser
GGA
[Ensembl]
¡û
>W1910657463
MAPU01000027
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
12240
12330
+
Ser
GGA
[ENA]
¡û
>W1910990683
NKUC01000019
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
42457
42367
-
Ser
GGA
[ENA]
¡û
>W1810000665
BEWM01000003
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
540816
540906
+
Ser
GGA
[ENA]
¡û
>W1810000807
BEWP01000006
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
204855
204945
+
Ser
GGA
[ENA]
¡û
>W1810069707
PEBQ01000114
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
19089
19179
+
Ser
GGA
[ENA]
¡û
>W1810604021
QGLT01000002
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
319748
319838
+
Ser
GGA
[ENA]
¡û
>C151006198
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
2717480
2717390
-
Ser
GGA
[Ensembl]
¡û
>C10100673
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
2275225
2275135
-
Ser
GGA
[Ensembl]
¡û
>C10100841
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2367443
2367353
-
Ser
GGA
[Ensembl]
¡û
>C10100898
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2367438
2367348
-
Ser
GGA
[Ensembl]
¡û
>C10101012
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
2370123
2370033
-
Ser
GGA
[Ensembl]
¡û
>C10101069
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2367456
2367366
-
Ser
GGA
[Ensembl]
¡û
>W1511271164
JOKL01000088
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
19341
19431
+
Ser
GGA
[ENA]
¡û
>W11149318
AEUP01000021
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
58650
58740
+
Ser
GGA
[ENA]
¡û
>W1511620461
LCTG01000004
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
797864
797954
+
Ser
GGA
[ENA]
¡û
>W11186832
CADR01000013
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
55800
55890
+
Ser
GGA
[ENA]
¡û
>C161001911
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2429418
2429328
-
Ser
GGA
-
¡û
>W121123000
BACG01000008
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
12040
12130
+
Ser
GGA
[ENA]
¡û
>W121126860
CADO01000013
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
26696
26606
-
Ser
GGA
[ENA]
¡û
>W121126901
CADQ01000015
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
12282
12372
+
Ser
GGA
[ENA]
¡û
>W1610624085
LHZC01000051
Alphaproteobacteria
Acetobacter malorum [LHZC]
6723
6633
-
Ser
GGA
[ENA]
¡û
>W1610624215
LHZF01000152
Alphaproteobacteria
Acetobacter malorum [LHZF]
109
19
-
Ser
GGA
[ENA]
¡û
>W1610624603
LHZN01000142
Alphaproteobacteria
Gluconobacter albidus [LHZN]
2714
2624
-
Ser
GGA
[ENA]
¡û
>W1610625091
LHZY01000029
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
22494
22584
+
Ser
GGA
[ENA]
¡û
>W1610625132
LHZZ01000613
Alphaproteobacteria
Acetobacter malorum [LHZZ]
2732
2642
-
Ser
GGA
[ENA]
¡û
>W1610954171
LVHD01000162
Alphaproteobacteria
Acetobacter malorum [LVHD]
1858
1768
-
Ser
GGA
[ENA]
¡û
>W1710624756
JOPG01000007
Alphaproteobacteria
Acetobacter malorum [JOPG]
79736
79826
+
Ser
GGA
[ENA]
¡û
>W1710755203
LHZC01000051
Alphaproteobacteria
Acetobacter malorum [LHZC]
6723
6633
-
Ser
GGA
[ENA]
¡û
>W1710755333
LHZF01000152
Alphaproteobacteria
Acetobacter malorum [LHZF]
109
19
-
Ser
GGA
[ENA]
¡û
>W1710755721
LHZN01000142
Alphaproteobacteria
Gluconobacter albidus [LHZN]
2714
2624
-
Ser
GGA
[ENA]
¡û
>W1710756209
LHZY01000029
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
22494
22584
+
Ser
GGA
[ENA]
¡û
>W1710756250
LHZZ01000613
Alphaproteobacteria
Acetobacter malorum [LHZZ]
2732
2642
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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