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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208714 (71 seq.)
>A171001125
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
1703266
1703340
+
Lys
CTT
-
¡û
>A171001305
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
3609657
3609583
-
Lys
CTT
-
¡û
>A171001562
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
9214
9288
+
Lys
CTT
-
¡û
>A171002465
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2551764
2551690
-
Lys
CTT
-
¡û
>A171003050
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2382188
2382262
+
Lys
CTT
-
¡û
>A171003103
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
3182161
3182235
+
Lys
CTT
-
¡û
>A171003176
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2998655
2998581
-
Lys
CTT
-
¡û
>A171003498
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1547090
1547016
-
Lys
CTT
-
¡û
>A171006712
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
905862
905788
-
Lys
CTT
-
¡û
>A171006753
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
933727
933653
-
Lys
CTT
-
¡û
>A171006921
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2844178
2844252
+
Lys
CTT
-
¡û
>WENV180318297
OBKM01000335
[OBKM] metagenome; water
18307
18232
-
Lys
CTT
[ENA]
¢þ
>WENV181404293
OGBZ01012107
[OGBZ] sediment metagenome; hot spring sediment
234
308
+
Lys
CTT
[ENA]
¢þ
>ENV08001219
ABMU01145711
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
6
82
+
Lys
CTT
[ENA]
¡û
>ENV08001847
ABOG01029813
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
96
23
-
Lys
CTT
[ENA]
¡û
>ENV08001867
ABOG01052888
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
28
101
+
Lys
CTT
[ENA]
¡û
>ENV08001875
ABOG01063869
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
9
85
+
Lys
CTT
[ENA]
¡û
>WENV170681708
LFFM01002199
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
78
4
-
Lys
CTT
[ENA]
¢þ
>WENV170682316
LFFM01009073
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
1698
1773
+
Lys
CTT
[ENA]
¢þ
>WENV170702030
LKMJ01000299
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
31714
31788
+
Lys
CTT
[ENA]
¢þ
>WENV170702230
LKMJ01000951
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
78
4
-
Lys
CTT
[ENA]
¢þ
>WENV170704189
LKMJ01024689
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1754
1828
+
Lys
CTT
[ENA]
¢þ
>W1910006728
BBJO01000064
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
14869
14944
+
Lys
CTT
[ENA]
¡û
>W1910227147
FNLC01000002
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
112300
112226
-
Lys
CTT
[ENA]
¡û
>W1910228423
FNPB01000003
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
244161
244236
+
Lys
CTT
[ENA]
¡û
>W1910228602
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
146208
146131
-
Lys
CTT
[ENA]
¡û
>W1910229797
FOFD01000002
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
246363
246437
+
Lys
CTT
[ENA]
¡û
>W1910229911
FOIC01000010
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
83530
83604
+
Lys
CTT
[ENA]
¡û
>W1910229932
FOIS01000002
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
74575
74649
+
Lys
CTT
[ENA]
¡û
>W1910230250
FOKW01000007
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
20392
20318
-
Lys
CTT
[ENA]
¡û
>W1910230423
FORO01000001
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
268489
268563
+
Lys
CTT
[ENA]
¡û
>W1910340544
FTNR01000004
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
227225
227151
-
Lys
CTT
[ENA]
¡û
>W1910572704
JNCS01000002
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
359622
359696
+
Lys
CTT
[ENA]
¡û
>W1910575884
JROF01000017
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
9819
9893
+
Lys
CTT
[ENA]
¡û
>W1910582998
JXAN01000001
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
115845
115919
+
Lys
CTT
[ENA]
¡û
>W1910646114
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1885795
1885869
+
Lys
CTT
[ENA]
¡û
>W1910657559
MASN01000029
Euryarchaeota
Natrialba sp. SSL1 [MASN]
55416
55342
-
Lys
CTT
[ENA]
¡û
>W1911433976
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1980151
1980225
+
Lys
CTT
[ENA]
¡û
>W1911493141
OBEJ01000001
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
1035250
1035176
-
Lys
CTT
[ENA]
¡û
>W1911591314
PKKI01000001
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
39333
39259
-
Lys
CTT
[ENA]
¡û
>W1911709637
QPLR01000002
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
686028
686103
+
Lys
CTT
[ENA]
¡û
>W1911709962
QPND01000001
Euryarchaeota
Saliphagus sp. LR7 [QPND]
226877
226803
-
Lys
CTT
[ENA]
¡û
>W1911769997
QXIJ01000011
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
92204
92129
-
Lys
CTT
[ENA]
¡û
>SRA1001278
SRR001062.162049
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
6
82
+
Lys
CTT
[SRA]
>W1610004074
AGIM01000001
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
399668
399742
+
Lys
CTT
[ENA]
¡û
>W1610004129
AGIN01000005
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
103223
103149
-
Lys
CTT
[ENA]
¡û
>W1610005372
AJVG01000006
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
76502
76428
-
Lys
CTT
[ENA]
¡û
>W1610011729
AOHS01000040
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
97592
97666
+
Lys
CTT
[ENA]
¡û
>W1610011884
AOHV01000046
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
37593
37519
-
Lys
CTT
[ENA]
¡û
>W1610011967
AOHX01000043
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
169318
169392
+
Lys
CTT
[ENA]
¡û
>W1610011999
AOHY01000016
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
43005
43079
+
Lys
CTT
[ENA]
¡û
>W1610012018
AOHZ01000010
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
1154
1228
+
Lys
CTT
[ENA]
¡û
>W1610012129
AOIB01000021
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
43567
43641
+
Lys
CTT
[ENA]
¡û
>W1610012184
AOIC01000116
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
7651
7725
+
Lys
CTT
[ENA]
¡û
>W1610012200
AOID01000015
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
59770
59694
-
Lys
CTT
[ENA]
¡û
>W1610012312
AOII01000088
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
139712
139786
+
Lys
CTT
[ENA]
¡û
>W1610012366
AOIJ01000086
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
196034
195960
-
Lys
CTT
[ENA]
¡û
>W1610012376
AOIK01000013
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
219245
219319
+
Lys
CTT
[ENA]
¡û
>W1610012447
AOIL01000067
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
170211
170285
+
Lys
CTT
[ENA]
¡û
>W1610012495
AOIM01000042
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
64444
64370
-
Lys
CTT
[ENA]
¡û
>W1610012515
AOIN01000059
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
9378
9304
-
Lys
CTT
[ENA]
¡û
>W1610012556
AOIO01000029
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
9270
9344
+
Lys
CTT
[ENA]
¡û
>W1610012583
AOIP01000008
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
53809
53883
+
Lys
CTT
[ENA]
¡û
>W1610012667
AOIR01000038
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
61708
61782
+
Lys
CTT
[ENA]
¡û
>W1610012749
AOIS01000069
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
15517
15591
+
Lys
CTT
[ENA]
¡û
>W1610012770
AOIT01000021
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
114933
115007
+
Lys
CTT
[ENA]
¡û
>W1610014426
AOLZ01000040
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
40198
40272
+
Lys
CTT
[ENA]
¡û
>W1610029955
AXZD01000013
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
9730
9804
+
Lys
CTT
[ENA]
¡û
>W1610082992
CBMA010000034
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
69589
69663
+
Lys
CTT
[ENA]
¡û
>W1610671396
LKCV01000488
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
937
1011
+
Lys
CTT
[ENA]
¡û
>W1610925035
LTAZ01000003
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
280489
280416
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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