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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218216 (33 seq.)
>W1711572462
MNBW01000020
Alphaproteobacteria
Nioella nitratireducens [MNBW]
15263
15346
+
Tyr
GTA
[ENA]
¡û
>C172000044
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
3784057
3783974
-
Tyr
GTA
-
¡û
>WENV180342931
OBLJ01202469
[OBLJ] soil metagenome; Clay
215
132
-
Tyr
GTA
[ENA]
¢þ
>WENV180360946
OBNU01067655
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
107
190
+
Tyr
GTA
[ENA]
¢þ
>WENV181293920
OFHG01041485
[OFHG] soil metagenome; Clay
161
78
-
Tyr
GTA
[ENA]
¢þ
>WENV181416494
OGCL01093490
[OGCL] hot springs metagenome; Hot spring water
289
206
-
Tyr
GTA
[ENA]
¢þ
>WENV183516399
OMKS01173297
[OMKS] sediment metagenome; hot spring sediment
550
467
-
Tyr
GTA
[ENA]
¢þ
>WENV170705273
LLEQ01002467
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
620
703
+
Tyr
GTA
[ENA]
¢þ
>C181052319
CP021404
Alphaproteobacteria
Pacificitalea manganoxidans DY25 [CP021404]
806601
806684
+
Tyr
GTA
-
¡û
>C181116784
CP025408
Alphaproteobacteria
Paracoccus tegillarcae BM15 [CP025408]
2281218
2281135
-
Tyr
GTA
-
¡û
>C191131976
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
3117343
3117426
+
Tyr
GTA
-
¡û
>C191159603
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
578697
578614
-
Tyr
GTA
-
¡û
>W1910808419
MUAV01000044
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
1604
1521
-
Tyr
GTA
[ENA]
¡û
>W1911696504
QMEJ01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
545274
545357
+
Tyr
GTA
[ENA]
¡û
>W1911718096
QQVY01000003
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
245842
245759
-
Tyr
GTA
[ENA]
¡û
>W1911813190
QZEV01000010
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
10128
10045
-
Tyr
GTA
[ENA]
¡û
>W1810426254
PYWA01000004
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
18745
18828
+
Tyr
GTA
[ENA]
¡û
>W1810486761
QAYC01000007
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
225250
225333
+
Tyr
GTA
[ENA]
¡û
>W1810543595
QDKM01000003
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
333873
333956
+
Tyr
GTA
[ENA]
¡û
>W1810583997
QEYD01000011
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
61442
61359
-
Tyr
GTA
[ENA]
¡û
>W1810667417
QJPK01000003
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
18856
18939
+
Tyr
GTA
[ENA]
¡û
>W1810684514
QKYL01000212
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
162138
162055
-
Tyr
GTA
[ENA]
¡û
>W1810722993
QNVX01000053
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
69445
69528
+
Tyr
GTA
[ENA]
¡û
>C162000042
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
2830067
2829984
-
Tyr
GTA
[Ensembl]
¡û
>W1620001620
LRRR01000033
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
14739
14822
+
Tyr
GTA
[ENA]
¡û
>W1720001075
FOHO01000001
Alphaproteobacteria
Paracoccus homiensis [FOHO]
127261
127344
+
Tyr
GTA
[ENA]
¡û
>W1720001210
FTOU01000001
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
641366
641283
-
Tyr
GTA
[ENA]
¡û
>W1720001304
JPKW01000002
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
326009
325926
-
Tyr
GTA
[ENA]
¡û
>W1720002074
LRRR01000033
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
14739
14822
+
Tyr
GTA
[ENA]
¡û
>W1720002787
MEES01000018
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
21338
21421
+
Tyr
GTA
[ENA]
¡û
>W1720003167
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3436268
3436351
+
Tyr
GTA
[ENA]
¡û
>W1720003176
MTBG01000001
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
66679
66596
-
Tyr
GTA
[ENA]
¡û
>W1710508103
FMVT01000010
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
21361
21444
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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