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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21927 (16 seq.)
>W1710892042
LNDJ01000001
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
44708
44618
-
Ser
GGA
[ENA]
¡û
>W1711682993
MRYC01000005
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
109924
110014
+
Ser
GGA
[ENA]
¡û
>C171019134
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
2219708
2219618
-
Ser
GGA
-
¡û
>C015980
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2882146
2882236
+
Ser
GGA
[Ensembl]
¡û
>W141086156
AUSW01000006
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
100864
100954
+
Ser
GGA
[ENA]
¡û
>WENV170014683
AYSL01004992
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
4647
4737
+
Ser
GGA
[ENA]
¢þ
>WENV170790850
MDSV01072719
[MDSV] marine metagenome; seawater
4627
4537
-
Ser
GGA
[ENA]
¢þ
>C181056030
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1579570
1579660
+
Ser
GGA
-
¡û
>W09103298
AAJC01000001
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
349145
349055
-
Ser
GGA
[ENA]
¡û
>C191163873
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
95209
95119
-
Ser
GGA
-
¡û
>W1910377593
FUKN01000012
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
116607
116517
-
Ser
GGA
[ENA]
¡û
>W1911203673
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
116631
116541
-
Ser
GGA
[ENA]
¡û
>C151097217
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1335189
1335279
+
Ser
GGA
-
¡û
>C161079269
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
3150228
3150318
+
Ser
GGA
[Ensembl]
¡û
>W1610752308
LNDJ01000001
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
44708
44618
-
Ser
GGA
[ENA]
¡û
>W1710513814
FNAL01000010
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
62509
62419
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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