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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22052 (88 seq.)
>W1710867406
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1129296
1129206
-
Ser
GGA
[ENA]
¡û
>W1710870184
LMKH01000036
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
312468
312378
-
Ser
GGA
[ENA]
¡û
>W1710870906
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
14808
14718
-
Ser
GGA
[ENA]
¡û
>W1710871245
LMLD01000015
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
41055
41145
+
Ser
GGA
[ENA]
¡û
>W1710872323
LMLW01000013
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
98269
98359
+
Ser
GGA
[ENA]
¡û
>W1710877229
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
591526
591616
+
Ser
GGA
[ENA]
¡û
>W1710912528
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
25954
25864
-
Ser
GGA
[ENA]
¡û
>W1710912625
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
158036
158126
+
Ser
GGA
[ENA]
¡û
>W1710913013
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14393
14483
+
Ser
GGA
[ENA]
¡û
>W1710913057
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
152585
152675
+
Ser
GGA
[ENA]
¡û
>W1711072366
LSHN01000044
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
138
48
-
Ser
GGA
[ENA]
¡û
>W1711072580
LSHS01000110
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
167368
167278
-
Ser
GGA
[ENA]
¡û
>W1711072640
LSHU01000002
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
43570
43660
+
Ser
GGA
[ENA]
¡û
>W1711072842
LSHZ01000025
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
5437
5527
+
Ser
GGA
[ENA]
¡û
>W1711075039
LSKB01000056
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
70765
70675
-
Ser
GGA
[ENA]
¡û
>W1711146776
LVJD01000261
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
9293
9203
-
Ser
GGA
[ENA]
¡û
>W1712105797
NISJ01000016
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
28042
27952
-
Ser
GGA
[ENA]
¡û
>W1712105841
NISK01000005
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
108145
108055
-
Ser
GGA
[ENA]
¡û
>C171094556
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
1177003
1177093
+
Ser
GGA
-
¡û
>C171095057
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
2763298
2763388
+
Ser
GGA
-
¡û
>C171108880
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
1099916
1099826
-
Ser
GGA
-
¡û
>C171128440
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
1697090
1697000
-
Ser
GGA
-
¡û
>W131002989
AGZU01000007
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
278713
278803
+
Ser
GGA
[ENA]
¡û
>W131058863
ANFZ01000006
Alphaproteobacteria
Blastomonas sp. AAP53 [ANFZ]
389183
389093
-
Ser
GGA
[ENA]
¡û
>W131160203
AQWK01000001
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
334889
334799
-
Ser
GGA
[ENA]
¡û
>W131196375
ASTG01000024
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
42674
42584
-
Ser
GGA
[ENA]
¡û
>C019729
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1688353
1688443
+
Ser
GGA
[Ensembl]
¡û
>WENV180105126
OAPD01007384
[OAPD] marine metagenome; 2010
581
671
+
Ser
GGA
[ENA]
¢þ
>W141193341
AYSC01000031
Alphaproteobacteria
Blastomonas sp. CACIA14H2 [AYSC]
47136
47046
-
Ser
GGA
[ENA]
¡û
>WENV170379891
CETV01249451
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
851
761
-
Ser
GGA
[ENA]
¢þ
>WENV170709919
LNFM01000919
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
68127
68217
+
Ser
GGA
[ENA]
¢þ
>WENV170735580
LULL01004537
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
713
623
-
Ser
GGA
[ENA]
¢þ
>WENV170745655
LULY01022250
[LULY] marine metagenome; Red Sea water column Station 91 - depth 200m
618
708
+
Ser
GGA
[ENA]
¢þ
>WENV170761393
LUMV01000185
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
6866
6776
-
Ser
GGA
[ENA]
¢þ
>WENV170974945
MTKY01081665
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1171
1261
+
Ser
GGA
[ENA]
¢þ
>C191002750
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
3246958
3247048
+
Ser
GGA
-
¡û
>C191163782
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
137145
137055
-
Ser
GGA
-
¡û
>C191185545
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
3786721
3786811
+
Ser
GGA
-
¡û
>W1911718563
QQWL01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env11_0417 [QQWL]
64564
64474
-
Ser
GGA
[ENA]
¡û
>W1911718839
QQWR01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt10_0210 [QQWR]
109126
109216
+
Ser
GGA
[ENA]
¡û
>W1911719248
QQXA01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt14_0612 [QQXA]
179241
179331
+
Ser
GGA
[ENA]
¡û
>W1911719319
QQXB01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt16_1112 [QQXB]
179293
179383
+
Ser
GGA
[ENA]
¡û
>W1911720597
QQYH01000004
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env40_0817 [QQYH]
79851
79761
-
Ser
GGA
[ENA]
¡û
>W1911720871
QQYN01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env34_0717 [QQYN]
154508
154418
-
Ser
GGA
[ENA]
¡û
>W1911721154
QQYT01000005
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env28_0717 [QQYT]
135729
135639
-
Ser
GGA
[ENA]
¡û
>W1911721559
QQZC01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env22_0617 [QQZC]
135729
135639
-
Ser
GGA
[ENA]
¡û
>SRA1003198
SRR002326.299386
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
74
164
+
Ser
GGA
[SRA]
>SRA1003611
SRR002327.67714
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
189
99
-
Ser
GGA
[SRA]
>SRA1003718
SRR002327.143032
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
237
147
-
Ser
GGA
[SRA]
>W1810476729
QAOF01000008
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
68829
68739
-
Ser
GGA
[ENA]
¡û
>W1810486913
QAYE01000009
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
231094
231184
+
Ser
GGA
[ENA]
¡û
>W1810658668
QJJM01000004
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
171433
171523
+
Ser
GGA
[ENA]
¡û
>W1810677137
QKMM01000013
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
88336
88426
+
Ser
GGA
[ENA]
¡û
>SRA1014211
SRR023845.40899
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
210
+
Ser
GGA
[SRA]
>SRA1014270
SRR023845.66824
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
23
113
+
Ser
GGA
[SRA]
>SRA1014344
SRR023845.98183
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
70
160
+
Ser
GGA
[SRA]
>SRA1014695
SRR023845.267065
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
136
46
-
Ser
GGA
[SRA]
>SRA1014752
SRR023845.299518
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
86
176
+
Ser
GGA
[SRA]
>SRA1014881
SRR023845.360767
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
210
+
Ser
GGA
[SRA]
>SRA1015165
SRR023845.483365
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
239
149
-
Ser
GGA
[SRA]
>SRA1015825
SRR023846.215393
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
73
163
+
Ser
GGA
[SRA]
>SRA1016474
SRR023846.517298
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
194
+
Ser
GGA
[SRA]
>C151044379
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2268676
2268766
+
Ser
GGA
[Ensembl]
¡û
>W1510019749
BBXA01000029
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
49008
49098
+
Ser
GGA
[ENA]
¡û
>W11176451
AFXE01000128
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
14140
14050
-
Ser
GGA
[ENA]
¡û
>C161054528
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
1005058
1005148
+
Ser
GGA
[Ensembl]
¡û
>C161055627
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
2798815
2798725
-
Ser
GGA
[Ensembl]
¡û
>W121086737
AKKE01000127
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
27888
27798
-
Ser
GGA
[ENA]
¡û
>W1610072040
BCUN01000064
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
5222
5132
-
Ser
GGA
[ENA]
¡û
>W1610550591
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2146610
2146520
-
Ser
GGA
[ENA]
¡û
>W1610732530
LMKH01000036
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
312468
312378
-
Ser
GGA
[ENA]
¡û
>W1610733252
LMKW01000010
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
14808
14718
-
Ser
GGA
[ENA]
¡û
>W1610734669
LMLW01000013
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
98269
98359
+
Ser
GGA
[ENA]
¡û
>W1610739575
LMPX01000003
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
591526
591616
+
Ser
GGA
[ENA]
¡û
>W1610770887
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
25954
25864
-
Ser
GGA
[ENA]
¡û
>W1610770984
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
158036
158126
+
Ser
GGA
[ENA]
¡û
>W1610771372
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14393
14483
+
Ser
GGA
[ENA]
¡û
>W1610771416
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
152585
152675
+
Ser
GGA
[ENA]
¡û
>W1610911626
LSHN01000044
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
138
48
-
Ser
GGA
[ENA]
¡û
>W1610911840
LSHS01000110
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
167368
167278
-
Ser
GGA
[ENA]
¡û
>W1610911900
LSHU01000002
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
43570
43660
+
Ser
GGA
[ENA]
¡û
>W1610912102
LSHZ01000025
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
5437
5527
+
Ser
GGA
[ENA]
¡û
>W1610914344
LSKB01000056
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
70765
70675
-
Ser
GGA
[ENA]
¡û
>W1710069242
BCUN01000064
Alphaproteobacteria
Sphingobium amiense NBRC 102518 [BCUN]
5222
5132
-
Ser
GGA
[ENA]
¡û
>W1710571540
FOVZ01000006
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
241997
242087
+
Ser
GGA
[ENA]
¡û
>W1710573617
FOXP01000008
Alphaproteobacteria
Sphingomonas rubra [FOXP]
155484
155574
+
Ser
GGA
[ENA]
¡û
>W1710592156
FRCG01000004
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
455884
455794
-
Ser
GGA
[ENA]
¡û
>W1710660354
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
2146610
2146520
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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