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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22312 (62 seq.)
>W1710785298
LJHS01000051
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
370
280
-
Ser
GCT
[ENA]
¡û
>W1710861513
LMDR01000001
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
367128
367038
-
Ser
GCT
[ENA]
¡û
>W1710863553
LMFF01000001
Alphaproteobacteria
Rhizobium sp. Root491 [LMFF]
466554
466464
-
Ser
GCT
[ENA]
¡û
>W1710873071
LMMM01000019
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
83923
83833
-
Ser
GCT
[ENA]
¡û
>W1710883091
LMVJ01000001
Alphaproteobacteria
Agrobacterium radiobacter tumefaciens [LMVJ]
455571
455661
+
Ser
GCT
[ENA]
¡û
>W1710916247
LNUW01000009
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
720
810
+
Ser
GCT
[ENA]
¡û
>W1710921682
LNZW01000085
Alphaproteobacteria
Agrobacterium pusense [LNZW]
35317
35407
+
Ser
GCT
[ENA]
¡û
>W1711135164
LUYP01000057
Alphaproteobacteria
Rhizobiales bacterium Alpha_03 [LUYP]
33005
33095
+
Ser
GCT
[ENA]
¡û
>W1711139780
LVFG01000011
Alphaproteobacteria
Rhizobium sp. GHKF11 [LVFG]
434475
434385
-
Ser
GCT
[ENA]
¡û
>W1711214006
LXKU01000002
Alphaproteobacteria
Agrobacterium rubi [LXKU]
238124
238214
+
Ser
GCT
[ENA]
¡û
>W1711667300
MRDJ01000011
Alphaproteobacteria
Agrobacterium pusense [MRDJ]
912515
912605
+
Ser
GCT
[ENA]
¡û
>W131178184
ARLJ01000025
Alphaproteobacteria
Agrobacterium sp. 10MFCol1.1 [ARLJ]
4
94
+
Ser
GCT
[ENA]
¡û
>W131182518
ARQL01000012
Alphaproteobacteria
Agrobacterium sp. 224MFTsu3.1 [ARQL]
201112
201202
+
Ser
GCT
[ENA]
¡û
>W131203230
ASXY01000375
Alphaproteobacteria
Agrobacterium radiobacter DSM 30147 [ASXY]
1155
1065
-
Ser
GCT
[ENA]
¡û
>W141137282
AWGV01000359
Alphaproteobacteria
Agrobacterium tumefaciens GW4 [AWGV]
2151
2061
-
Ser
GCT
[ENA]
¡û
>C08000938
AE007869
Alphaproteobacteria
Agrobacterium fabrum str. C58 [AE007869, AE007870]
1011012
1011102
+
Ser
GCT
[Ensembl]
¡û
>WENV183737984
PJUD01061161
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
478
568
+
Ser
GCT
[ENA]
¢þ
>C191098277
CP033027
Alphaproteobacteria
Agrobacterium tumefaciens A6 [CP033027, CP033028]
651158
651248
+
Ser
GCT
-
¡û
>C191098386
CP033034
Alphaproteobacteria
Agrobacterium fabrum 12D13 [CP033034, CP033035]
684905
684995
+
Ser
GCT
-
¡û
>C191172858
CP039897
Alphaproteobacteria
Agrobacterium tumefaciens CFBP5877 [CP039897, CP039898]
725283
725373
+
Ser
GCT
-
¡û
>C191188679
CP041204
Alphaproteobacteria
Rhizobium sp. NIBRBAC000502774 [CP041204]
1862670
1862760
+
Ser
GCT
-
¡û
>W1910199895
FBWM01000002
Alphaproteobacteria
Agrobacterium sp. NCPPB 925 6 str. NCPPB 925 [FBWM]
25187
25097
-
Ser
GCT
[ENA]
¡û
>W1910643332
LUKX01000001
Alphaproteobacteria
Agrobacterium fabrum ATCC 31749 [LUKX]
1589237
1589327
+
Ser
GCT
[ENA]
¡û
>W1911496252
OCMJ01000004
Alphaproteobacteria
Rhizobium sp. AN5 [OCMJ]
757138
757228
+
Ser
GCT
[ENA]
¡û
>W1911615206
POYI01000006
Alphaproteobacteria
Rhizobium sp. YIC5082 [POYI]
827225
827135
-
Ser
GCT
[ENA]
¡û
>W1911655779
QERG01000001
Alphaproteobacteria
Rhizobium sp. SEMIA 439 [QERG]
913007
913097
+
Ser
GCT
[ENA]
¡û
>W1911655823
QERH01000001
Alphaproteobacteria
Rhizobium sp. SEMIA 4032 [QERH]
414610
414700
+
Ser
GCT
[ENA]
¡û
>W1911765954
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
808855
808945
+
Ser
GCT
[ENA]
¡û
>W1810089053
PGEL01000014
Alphaproteobacteria
Agrobacterium bohemicum R90 [PGEL]
90554
90464
-
Ser
GCT
[ENA]
¡û
>W1810108779
PHGS01000006
Alphaproteobacteria
Agrobacterium sp. LAD9 [PHGS]
47883
47973
+
Ser
GCT
[ENA]
¡û
>W1810192899
PKMZ01000001
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
401338
401248
-
Ser
GCT
[ENA]
¡û
>W1810366563
PVWU01000138
Alphaproteobacteria
Agrobacterium pusense S2 [PVWU]
23
113
+
Ser
GCT
[ENA]
¡û
>W1810493409
QBDX01000002
Alphaproteobacteria
Hyphobacterium indicum 2ED5 [QBDX]
485202
485292
+
Ser
GCT
[ENA]
¡û
>SRA1015526
SRR023846.97550
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
15
105
+
Ser
GCT
[SRA]
>SRA1016005
SRR023846.305932
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
10
100
+
Ser
GCT
[SRA]
>SRA1016103
SRR023846.349894
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
15
105
+
Ser
GCT
[SRA]
>SRA1016553
SRR023846.560952
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
10
100
+
Ser
GCT
[SRA]
>W11132804
AECL01000015
Alphaproteobacteria
Agrobacterium sp. ATCC 31749 [AECL]
36560
36650
+
Ser
GCT
[ENA]
¡û
>W1511480229
JWIT01000019
Alphaproteobacteria
Agrobacterium arsenijevicii KFB 330 [JWIT]
35758
35848
+
Ser
GCT
[ENA]
¡û
>W1511525071
JYFU01000002
Alphaproteobacteria
Rhizobium sp. UR51a [JYFU]
348004
348094
+
Ser
GCT
[ENA]
¡û
>W1511546772
JZLL01000023
Alphaproteobacteria
Agrobacterium tumefaciens F4 [JZLL]
87029
87119
+
Ser
GCT
[ENA]
¡û
>W1511552083
JZUD01000030
Alphaproteobacteria
Rhizobium sp. LMB-1 [JZUD]
1896
1806
-
Ser
GCT
[ENA]
¡û
>C161095867
CP016320
Alphaproteobacteria
Rhizobium sp. S41 [CP016320, CP016433]
2922263
2922353
+
Ser
GCT
-
¡û
>W121021646
AGVZ01000002
Alphaproteobacteria
Agrobacterium tumefaciens 5A [AGVZ]
287819
287909
+
Ser
GCT
[ENA]
¡û
>W1610020935
ASXX01000038
Alphaproteobacteria
Agrobacterium sp. D14 [ASXX]
12346
12436
+
Ser
GCT
[ENA]
¡û
>W1610021101
ASYC01000025
Alphaproteobacteria
Agrobacterium sp. TS45 [ASYC]
26772
26862
+
Ser
GCT
[ENA]
¡û
>W1610021142
ASYD01000026
Alphaproteobacteria
Agrobacterium sp. C13 [ASYD]
1580
1490
-
Ser
GCT
[ENA]
¡û
>W1610649104
LJHS01000051
Alphaproteobacteria
Rhizobium sp. AAP43 [LJHS]
370
280
-
Ser
GCT
[ENA]
¡û
>W1610723859
LMDR01000001
Alphaproteobacteria
Rhizobium sp. Root1240 [LMDR]
367128
367038
-
Ser
GCT
[ENA]
¡û
>W1610725899
LMFF01000001
Alphaproteobacteria
Rhizobium sp. Root491 [LMFF]
466554
466464
-
Ser
GCT
[ENA]
¡û
>W1610735417
LMMM01000019
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
83923
83833
-
Ser
GCT
[ENA]
¡û
>W1610745017
LMVJ01000001
Alphaproteobacteria
Agrobacterium radiobacter tumefaciens [LMVJ]
455571
455661
+
Ser
GCT
[ENA]
¡û
>W1610774486
LNUW01000009
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
720
810
+
Ser
GCT
[ENA]
¡û
>W1610946284
LUYP01000057
Alphaproteobacteria
Rhizobiales bacterium Alpha_03 [LUYP]
33005
33095
+
Ser
GCT
[ENA]
¡û
>W1610950788
LVFG01000011
Alphaproteobacteria
Rhizobium sp. GHKF11 [LVFG]
434475
434385
-
Ser
GCT
[ENA]
¡û
>W1611001010
LXKU01000002
Alphaproteobacteria
Agrobacterium rubi [LXKU]
238124
238214
+
Ser
GCT
[ENA]
¡û
>W1710017647
ASXX01000038
Alphaproteobacteria
Agrobacterium sp. D14 [ASXX]
12346
12436
+
Ser
GCT
[ENA]
¡û
>W1710017813
ASYC01000025
Alphaproteobacteria
Agrobacterium sp. TS45 [ASYC]
26772
26862
+
Ser
GCT
[ENA]
¡û
>W1710017854
ASYD01000026
Alphaproteobacteria
Agrobacterium sp. C13 [ASYD]
1580
1490
-
Ser
GCT
[ENA]
¡û
>W1710084230
BDLN01000001
Alphaproteobacteria
Rhizobium sp. TBD182 [BDLN]
864623
864533
-
Ser
GCT
[ENA]
¡û
>W1710507134
FMVA01000002
Alphaproteobacteria
Rhizobium sp. NFACC06-2 [FMVA]
489974
489884
-
Ser
GCT
[ENA]
¡û
>W1710610131
FYEM01000009
Alphaproteobacteria
Agrobacterium sp. 719_389 [FYEM]
202394
202304
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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