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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225823 (6 seq.)
>W1711700357
MSMP01000026
Bacteroidota
Tenacibaculum agarivorans HZ1 [MSMP]
16130
16206
+
His
GTG
[ENA]
¡û
>C171125907
CP021904
Bacteroidota
Alkalitalea saponilacus SC/BZ-SP2 [CP021904]
1737584
1737658
+
His
GTG
-
¡û
>WENV170690366
LFRM01337688
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2558
2634
+
His
GTG
[ENA]
¢þ
>WENV170718220
LSQX01066393
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
39
115
+
His
GTG
[ENA]
¢þ
>W1510006601
BAZW01000007
Bacteroidota
Geofilum rubicundum JCM 15548 [BAZW]
126198
126124
-
His
GTG
[ENA]
¡û
>W1710603142
FUYV01000001
Bacteroidota
Alkalitalea saponilacus [FUYV]
148115
148041
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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