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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.229218 (67 seq.)
>A171003598
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1863645
1863564
-
Ser
CGA
-
¡û
>A171004945
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3517660
3517741
+
Ser
CGA
-
¡û
>A171004995
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3476185
3476266
+
Ser
CGA
-
¡û
>A171005047
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3573356
3573437
+
Ser
CGA
-
¡û
>A171005109
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
2827292
2827211
-
Ser
CGA
-
¡û
>A171005170
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1905402
1905321
-
Ser
CGA
-
¡û
>At1545
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2154810
2154731
-
Ser
CGA
[Ensembl]
¡û
>WENV170668926
LAHQ01128623
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
179
98
-
Ser
CGA
[ENA]
¢þ
>WENV170724961
LSQX01325067
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5613
5532
-
Ser
CGA
[ENA]
¢þ
>W1910569258
JJOR01000134
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
5515
5434
-
Ser
CGA
[ENA]
¡û
>W1910569294
JJOS01000038
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
15501
15582
+
Ser
CGA
[ENA]
¡û
>W1910569362
JJOT01000066
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
1151
1070
-
Ser
CGA
[ENA]
¡û
>W1910569388
JJOU01000049
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
14468
14387
-
Ser
CGA
[ENA]
¡û
>W1910569706
JJPA01000134
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
12052
11971
-
Ser
CGA
[ENA]
¡û
>W1910569782
JJPB01000135
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
56881
56962
+
Ser
CGA
[ENA]
¡û
>W1910569832
JJPC01000159
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
5495
5414
-
Ser
CGA
[ENA]
¡û
>W1910569851
JJPD01000089
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
12715
12796
+
Ser
CGA
[ENA]
¡û
>W1910569928
JJPE01000140
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
14562
14481
-
Ser
CGA
[ENA]
¡û
>W1910569979
JJPF01000115
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
16836
16755
-
Ser
CGA
[ENA]
¡û
>W1910570002
JJPG01000041
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
16800
16719
-
Ser
CGA
[ENA]
¡û
>W1910570065
JJPH01000069
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
12715
12796
+
Ser
CGA
[ENA]
¡û
>W1910570131
JJPI01000117
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
12374
12455
+
Ser
CGA
[ENA]
¡û
>W1910570189
JJPJ01000143
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
20218
20137
-
Ser
CGA
[ENA]
¡û
>W1910570241
JJPK01000121
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
12342
12423
+
Ser
CGA
[ENA]
¡û
>W1910570290
JJPL01000138
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
5499
5418
-
Ser
CGA
[ENA]
¡û
>W1910570324
JJPM01000194
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
3689
3770
+
Ser
CGA
[ENA]
¡û
>W1910570378
JJPN01000124
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
13152
13233
+
Ser
CGA
[ENA]
¡û
>W1910570423
JJPO01000089
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
11981
12062
+
Ser
CGA
[ENA]
¡û
>W1910570475
JJPP01000119
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
5495
5414
-
Ser
CGA
[ENA]
¡û
>W1910570544
JJPQ01000179
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
27751
27670
-
Ser
CGA
[ENA]
¡û
>W1910570564
JJPR01000048
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
5503
5422
-
Ser
CGA
[ENA]
¡û
>W1910570611
JJPS01000071
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
11438
11519
+
Ser
CGA
[ENA]
¡û
>W1910570677
JJPT01000102
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
37697
37616
-
Ser
CGA
[ENA]
¡û
>W1910570700
JJPU01000017
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
12001
12082
+
Ser
CGA
[ENA]
¡û
>W1910570783
JJPV01000088
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
16052
16133
+
Ser
CGA
[ENA]
¡û
>W1910570842
JJPW01000099
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
20218
20137
-
Ser
CGA
[ENA]
¡û
>W1910570867
JJPX01000068
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
11434
11515
+
Ser
CGA
[ENA]
¡û
>W1910570942
JJPY01000101
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
56360
56441
+
Ser
CGA
[ENA]
¡û
>W1910570982
JJPZ01000109
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
13152
13233
+
Ser
CGA
[ENA]
¡û
>W1910571037
JJQA01000101
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
38210
38129
-
Ser
CGA
[ENA]
¡û
>W1910571080
JJQB01000090
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
43292
43373
+
Ser
CGA
[ENA]
¡û
>W1910571143
JJQC01000146
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
12779
12860
+
Ser
CGA
[ENA]
¡û
>W1910571183
JJQD01000155
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
43177
43258
+
Ser
CGA
[ENA]
¡û
>W1910571206
JJQE01000027
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
14452
14371
-
Ser
CGA
[ENA]
¡û
>W1910571297
JJQF01000126
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
28923
28842
-
Ser
CGA
[ENA]
¡û
>W1910571345
JJQG01000125
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
47213
47132
-
Ser
CGA
[ENA]
¡û
>W1910571361
JJQH01000048
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
6558
6477
-
Ser
CGA
[ENA]
¡û
>W1910571453
JJQI01000118
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
7929
7848
-
Ser
CGA
[ENA]
¡û
>W1910571501
JJQJ01000207
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
12078
11997
-
Ser
CGA
[ENA]
¡û
>W1910571520
JJQK01000052
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
11363
11444
+
Ser
CGA
[ENA]
¡û
>W1910571675
JJQM01000169
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
37831
37750
-
Ser
CGA
[ENA]
¡û
>W1910571694
JJQN01000057
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
12342
12423
+
Ser
CGA
[ENA]
¡û
>W1910571746
JJQO01000034
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
12961
13042
+
Ser
CGA
[ENA]
¡û
>W1910571807
JJQP01000080
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
5454
5373
-
Ser
CGA
[ENA]
¡û
>W1910571865
JJQQ01000053
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
15190
15271
+
Ser
CGA
[ENA]
¡û
>W1910571904
JJQR01000008
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
12961
13042
+
Ser
CGA
[ENA]
¡û
>W1910571987
JJQS01000079
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
5504
5423
-
Ser
CGA
[ENA]
¡û
>W1910572016
JJQT01000070
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
12077
11996
-
Ser
CGA
[ENA]
¡û
>W1910572084
JJQU01000136
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
11262
11343
+
Ser
CGA
[ENA]
¡û
>W1910572127
JJQV01000059
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
5495
5414
-
Ser
CGA
[ENA]
¡û
>W1910572183
JJQW01000103
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
5500
5419
-
Ser
CGA
[ENA]
¡û
>W1910572216
JJQX01000059
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
12003
11922
-
Ser
CGA
[ENA]
¡û
>W1910572339
JJQZ01000136
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
37635
37554
-
Ser
CGA
[ENA]
¡û
>W1910572390
JJRA01000130
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
5479
5398
-
Ser
CGA
[ENA]
¡û
>W1910572418
JJRB01000077
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
5502
5421
-
Ser
CGA
[ENA]
¡û
>W1910575069
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
1465591
1465510
-
Ser
CGA
[ENA]
¡û
>W1610045123
BBBC01000107
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
2589
2508
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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