This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235634 (138 seq.)
>W1710797350
LJSZ01000029
Bacillota
Clostridium sporogenes [LJSZ]
48583
48508
-
Lys
CTT
[ENA]
¡û
>W1710797358
LJSZ01000029
Bacillota
Clostridium sporogenes [LJSZ]
47849
47774
-
Lys
CTT
[ENA]
¡û
>W1710797444
LJTA01000047
Bacillota
Clostridium sporogenes [LJTA]
58456
58381
-
Lys
CTT
[ENA]
¡û
>W1710797452
LJTA01000047
Bacillota
Clostridium sporogenes [LJTA]
57722
57647
-
Lys
CTT
[ENA]
¡û
>W1710797467
LJTA01000056
Bacillota
Clostridium sporogenes [LJTA]
332
407
+
Lys
CTT
[ENA]
¡û
>W1711048204
LRPL01000089
Bacillota
Anaerococcus hydrogenalis [LRPL]
17118
17043
-
Lys
CTT
[ENA]
¡û
>W131051140
AMXI01000359
Bacillota
Clostridium botulinum CFSAN001627 [AMXI]
5
80
+
Lys
CTT
[ENA]
¡û
>W1711791317
MWIW01000033
Bacillota
Clostridium botulinum [MWIW]
217
142
-
Lys
CTT
[ENA]
¡û
>W1712042166
NFLO01000001
Bacillota
Drancourtella sp. An12 [NFLO]
134172
134245
+
Lys
CTT
[ENA]
¡û
>C007083
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
2524094
2524019
-
Lys
CTT
[Ensembl]
¡û
>W08008118
ABKW02000002
Bacillota
Clostridium sporogenes ATCC 15579 [ABKW]
355254
355329
+
Lys
CTT
[ENA]
¡û
>WENV181805209
OGSH01003173
[OGSH] human gut metagenome; fecal sample 5 from infant 6
1082
1007
-
Lys
CTT
[ENA]
¢þ
>W141213094
AZRR01000149
Bacillota
Clostridium botulinum CDC54091 [AZRR]
84
159
+
Lys
CTT
[ENA]
¡û
>C08002490
CP000726
Bacillota
Clostridium botulinum A str. ATCC 19397 [CP000726]
3439633
3439561
-
Lys
CTT
[Ensembl]
¡û
>C08002808
CP000728
Bacillota
Clostridium botulinum F str. Langeland [CP000728]
3557163
3557091
-
Lys
CTT
[Ensembl]
¡û
>W141231597
BAUF01000046
Bacillota
Clostridium botulinum B str. Osaka05 [BAUF]
172
97
-
Lys
CTT
[ENA]
¡û
>W141265706
CCFK01000004
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
341517
341592
+
Lys
CTT
[ENA]
¡û
>W141265723
CCFK01000004
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
343965
344040
+
Lys
CTT
[ENA]
¡û
>W141265734
CCFK01000004
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
344948
345023
+
Lys
CTT
[ENA]
¡û
>W141265738
CCFK01000005
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
273
348
+
Lys
CTT
[ENA]
¡û
>W141267304
CCNN01000004
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
341517
341592
+
Lys
CTT
[ENA]
¡û
>W141267321
CCNN01000004
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
343965
344040
+
Lys
CTT
[ENA]
¡û
>W141267332
CCNN01000004
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
344948
345023
+
Lys
CTT
[ENA]
¡û
>W141267336
CCNN01000005
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
273
348
+
Lys
CTT
[ENA]
¡û
>WENV170563901
CZCB01034914
[CZCB] anaerobic digester metagenome; anaerobic digester
1800
1875
+
Lys
CTT
[ENA]
¢þ
>WENV170688918
LFRM01268413
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
13450
13525
+
Lys
CTT
[ENA]
¢þ
>W141451971
JFBQ01000010
Bacillota
Clostridium sporogenes [JFBQ]
136488
136413
-
Lys
CTT
[ENA]
¡û
>W141451996
JFBQ01000011
Bacillota
Clostridium sporogenes [JFBQ]
198
123
-
Lys
CTT
[ENA]
¡û
>W141460564
JFGA01000998
Bacillota
Clostridium botulinum [JFGA]
655
580
-
Lys
CTT
[ENA]
¡û
>C181012887
CP013242
Bacillota
Clostridium sporogenes CDC_67071 [CP013242]
3885050
3885125
+
Lys
CTT
-
¡û
>C181013565
CP013841
Bacillota
Clostridium botulinum AM1051 [CP013841]
3475829
3475754
-
Lys
CTT
-
¡û
>C181013727
CP013845
Bacillota
Clostridium botulinum A634 [CP013845]
3458112
3458037
-
Lys
CTT
-
¡û
>C181013971
CP013850
Bacillota
Clostridium botulinum B305 [CP013850]
3624475
3624400
-
Lys
CTT
-
¡û
>C181016055
CP014151
Bacillota
Clostridium botulinum BrDura [CP014151]
3473020
3472945
-
Lys
CTT
-
¡û
>C181047860
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
4905933
4905858
-
Lys
CTT
-
¡û
>C181114032
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
3189513
3189588
+
Lys
CTT
-
¡û
>C181195286
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
2918162
2918237
+
Lys
CTT
-
¡û
>C181226477
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2036907
2036832
-
Lys
CTT
-
¡û
>C181226481
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2036514
2036439
-
Lys
CTT
-
¡û
>C191010672
CP013686
Bacillota
Clostridium botulinum F1425 [CP013686]
1811
1736
-
Lys
CTT
-
¡û
>W141565635
JIBU02000113
Bacillota
Clostridium drakei [JIBU]
452
377
-
Lys
CTT
[ENA]
¡û
>W141569601
JIDX01000159
Bacillota
Clostridium scatologenes [JIDX]
612
537
-
Lys
CTT
[ENA]
¡û
>W141569605
JIDX01000159
Bacillota
Clostridium scatologenes [JIDX]
272
197
-
Lys
CTT
[ENA]
¡û
>W141820385
JQMW01000009
Bacillota
Clostridium sp. KNHs214 [JQMW]
45344
45419
+
Lys
CTT
[ENA]
¡û
>W141820393
JQMW01000009
Bacillota
Clostridium sp. KNHs214 [JQMW]
46011
46086
+
Lys
CTT
[ENA]
¡û
>C09102865
CP001581
Bacillota
Clostridium botulinum A2 str. Kyoto [CP001581]
3705604
3705529
-
Lys
CTT
[Ensembl]
¡û
>W1910884615
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
989547
989472
-
Lys
CTT
[ENA]
¡û
>W1911694092
QMAN01000041
Bacillota
Clostridium tetani 1337 [QMAN]
2
77
+
Lys
CTT
[ENA]
¡û
>W1911694130
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
283326
283251
-
Lys
CTT
[ENA]
¡û
>W1911694208
QMAP01000029
Bacillota
Clostridium tetani 2017.061 [QMAP]
553
478
-
Lys
CTT
[ENA]
¡û
>W1911694212
QMAP01000029
Bacillota
Clostridium tetani 2017.061 [QMAP]
162
87
-
Lys
CTT
[ENA]
¡û
>W1911694274
QMAQ01000068
Bacillota
Clostridium tetani 202.15 [QMAQ]
221
146
-
Lys
CTT
[ENA]
¡û
>W1911694279
QMAR01000009
Bacillota
Clostridium tetani 157.15 [QMAR]
612
537
-
Lys
CTT
[ENA]
¡û
>W1911694332
QMAR01000039
Bacillota
Clostridium tetani 157.15 [QMAR]
219
144
-
Lys
CTT
[ENA]
¡û
>W1911694363
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
40305
40380
+
Lys
CTT
[ENA]
¡û
>W1911694367
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
40698
40773
+
Lys
CTT
[ENA]
¡û
>W1911694457
QMAT01000048
Bacillota
Clostridium tetani 46.1.08 [QMAT]
221
146
-
Lys
CTT
[ENA]
¡û
>W1911694495
QMAU01000015
Bacillota
Clostridium tetani 63.05 [QMAU]
37823
37898
+
Lys
CTT
[ENA]
¡û
>W1911694518
QMAU01000056
Bacillota
Clostridium tetani 63.05 [QMAU]
263
338
+
Lys
CTT
[ENA]
¡û
>W1911694566
QMAV01000049
Bacillota
Clostridium tetani 358.99 [QMAV]
755
680
-
Lys
CTT
[ENA]
¡û
>W1911694623
QMAW01000037
Bacillota
Clostridium tetani 75.97 [QMAW]
555
480
-
Lys
CTT
[ENA]
¡û
>W1911694627
QMAW01000037
Bacillota
Clostridium tetani 75.97 [QMAW]
162
87
-
Lys
CTT
[ENA]
¡û
>W1911694683
QMAX01000035
Bacillota
Clostridium tetani 407.86 [QMAX]
555
480
-
Lys
CTT
[ENA]
¡û
>W1911694687
QMAX01000035
Bacillota
Clostridium tetani 407.86 [QMAX]
162
87
-
Lys
CTT
[ENA]
¡û
>W1911694746
QMAY01000028
Bacillota
Clostridium tetani 641.84 [QMAY]
555
480
-
Lys
CTT
[ENA]
¡û
>W1911694750
QMAY01000028
Bacillota
Clostridium tetani 641.84 [QMAY]
162
87
-
Lys
CTT
[ENA]
¡û
>W1911694815
QMAZ01000058
Bacillota
Clostridium tetani 132CV [QMAZ]
243
168
-
Lys
CTT
[ENA]
¡û
>W1911694818
QMAZ01000061
Bacillota
Clostridium tetani 132CV [QMAZ]
184
109
-
Lys
CTT
[ENA]
¡û
>W1911694875
QMBA01000039
Bacillota
Clostridium tetani 3582 [QMBA]
243
168
-
Lys
CTT
[ENA]
¡û
>W1911694877
QMBA01000040
Bacillota
Clostridium tetani 3582 [QMBA]
184
109
-
Lys
CTT
[ENA]
¡û
>W1911694924
QMBB01000022
Bacillota
Clostridium tetani TMB2 [QMBB]
13741
13666
-
Lys
CTT
[ENA]
¡û
>W1911694937
QMBB01000027
Bacillota
Clostridium tetani TMB2 [QMBB]
243
168
-
Lys
CTT
[ENA]
¡û
>W1911694983
QMBC01000038
Bacillota
Clostridium tetani COR1 [QMBC]
555
480
-
Lys
CTT
[ENA]
¡û
>W1911694987
QMBC01000038
Bacillota
Clostridium tetani COR1 [QMBC]
162
87
-
Lys
CTT
[ENA]
¡û
>W1911695041
QMBD01000020
Bacillota
Clostridium tetani B4 [QMBD]
555
480
-
Lys
CTT
[ENA]
¡û
>W1911695045
QMBD01000020
Bacillota
Clostridium tetani B4 [QMBD]
162
87
-
Lys
CTT
[ENA]
¡û
>W1911695097
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
90660
90585
-
Lys
CTT
[ENA]
¡û
>W1911695106
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
89730
89655
-
Lys
CTT
[ENA]
¡û
>W1911695172
QMBF01000038
Bacillota
Clostridium tetani 329 [QMBF]
555
480
-
Lys
CTT
[ENA]
¡û
>W1911695176
QMBF01000038
Bacillota
Clostridium tetani 329 [QMBF]
162
87
-
Lys
CTT
[ENA]
¡û
>W1911695231
QMBG01000042
Bacillota
Clostridium tetani 1240 [QMBG]
555
480
-
Lys
CTT
[ENA]
¡û
>W1911695245
QMBG01000049
Bacillota
Clostridium tetani 1240 [QMBG]
21
96
+
Lys
CTT
[ENA]
¡û
>W1911695271
QMBH01000015
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
371344
371269
-
Lys
CTT
[ENA]
¡û
>W1911695275
QMBH01000015
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
370953
370878
-
Lys
CTT
[ENA]
¡û
>W1911695318
QMBI01000021
Bacillota
Clostridium tetani 1586-U1 [QMBI]
2
77
+
Lys
CTT
[ENA]
¡û
>W1911695322
QMBI01000021
Bacillota
Clostridium tetani 1586-U1 [QMBI]
393
468
+
Lys
CTT
[ENA]
¡û
>W1911695374
QMBJ01000015
Bacillota
Clostridium tetani 4784A [QMBJ]
39694
39769
+
Lys
CTT
[ENA]
¡û
>W1911695421
QMBK01000009
Bacillota
Clostridium tetani Strain 3 [QMBK]
39744
39819
+
Lys
CTT
[ENA]
¡û
>W1911695467
QMBL01000002
Bacillota
Clostridium tetani Harvard [QMBL]
39694
39769
+
Lys
CTT
[ENA]
¡û
>W1911696426
QMDR01000044
Bacillota
Clostridium tetani 3483 [QMDR]
37753
37828
+
Lys
CTT
[ENA]
¡û
>W1911696442
QMDR01000063
Bacillota
Clostridium tetani 3483 [QMDR]
263
338
+
Lys
CTT
[ENA]
¡û
>W1911721874
QRAB01000005
Bacillota
Clostridium botulinum ATCC 17841 [QRAB]
63612
63537
-
Lys
CTT
[ENA]
¡û
>W1911744372
QVOC01000595
Bacillota
Clostridium botulinum CDC66008 [QVOC]
85
160
+
Lys
CTT
[ENA]
¡û
>C151086676
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4123006
4122931
-
Lys
CTT
[Ensembl]
¡û
>C151086679
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4122662
4122587
-
Lys
CTT
[Ensembl]
¡û
>W10105755
ACXU01000013
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
23319
23394
+
Lys
CTT
[ENA]
¡û
>W11108075
ACXU01000013
Bacillota
Anaerococcus vaginalis ATCC 51170 [ACXU]
23319
23394
+
Lys
CTT
[ENA]
¡û
>W1510755131
CYSK01000013
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
871344
871419
+
Lys
CTT
[ENA]
¡û
>W1511345177
JRGG01000003
Bacillota
Clostridium tetani C2 [JRGG]
249034
248959
-
Lys
CTT
[ENA]
¡û
>W1511480238
JWIX01000027
Bacillota
Clostridium tetani A [JWIX]
163661
163586
-
Lys
CTT
[ENA]
¡û
>W1511506926
JXMY01000079
Bacillota
Clostridium botulinum 277-00 [JXMY]
164
239
+
Lys
CTT
[ENA]
¡û
>W1511544348
JZJN01000127
Bacillota
Clostridium sporogenes 11579 [JZJN]
566
641
+
Lys
CTT
[ENA]
¡û
>W1511589790
LBFH01000010
Bacillota
Clostridium botulinum Walls 8G [LBFH]
113
188
+
Lys
CTT
[ENA]
¡û
>W1511699316
LGIK01000045
Bacillota
Clostridium botulinum ATCC 17862 [LGIK]
133
208
+
Lys
CTT
[ENA]
¡û
>W1511699346
LGIL01000011
Bacillota
Clostridium botulinum ATCC 7949 [LGIL]
133
208
+
Lys
CTT
[ENA]
¡û
>W1610026315
AUYY01000009
Bacillota
Clostridium botulinum B2 267 [AUYY]
148164
148089
-
Lys
CTT
[ENA]
¡û
>W1610026526
AUZC01000013
Bacillota
Clostridium botulinum F 357 [AUZC]
55804
55729
-
Lys
CTT
[ENA]
¡û
>W1610601727
LFOT01000019
Bacillota
Clostridium botulinum [LFOT]
70406
70481
+
Lys
CTT
[ENA]
¡û
>W1610601786
LFOU01000068
Bacillota
Clostridium botulinum [LFOU]
83
158
+
Lys
CTT
[ENA]
¡û
>W1610601825
LFOV01000004
Bacillota
Clostridium botulinum [LFOV]
299807
299882
+
Lys
CTT
[ENA]
¡û
>W1610602380
LFPF01000024
Bacillota
Clostridium botulinum [LFPF]
167
92
-
Lys
CTT
[ENA]
¡û
>W1610602703
LFPK01000023
Bacillota
Clostridium sporogenes botulinum [LFPK]
83
158
+
Lys
CTT
[ENA]
¡û
>W1610602980
LFPP01000013
Bacillota
Clostridium botulinum [LFPP]
83
158
+
Lys
CTT
[ENA]
¡û
>W1610604238
LFQV01000092
Bacillota
Clostridium botulinum [LFQV]
165
240
+
Lys
CTT
[ENA]
¡û
>W1610604755
LFRD01000075
Bacillota
Clostridium botulinum [LFRD]
83
158
+
Lys
CTT
[ENA]
¡û
>W1610605973
LFSL01000112
Bacillota
Clostridiales bacterium DTU058 [LFSL]
13450
13525
+
Lys
CTT
[ENA]
¡û
>W1610661307
LJSZ01000029
Bacillota
Clostridium sporogenes [LJSZ]
48583
48508
-
Lys
CTT
[ENA]
¡û
>W1610661315
LJSZ01000029
Bacillota
Clostridium sporogenes [LJSZ]
47849
47774
-
Lys
CTT
[ENA]
¡û
>W1610661401
LJTA01000047
Bacillota
Clostridium sporogenes [LJTA]
58456
58381
-
Lys
CTT
[ENA]
¡û
>W1610661409
LJTA01000047
Bacillota
Clostridium sporogenes [LJTA]
57722
57647
-
Lys
CTT
[ENA]
¡û
>W1610661424
LJTA01000056
Bacillota
Clostridium sporogenes [LJTA]
332
407
+
Lys
CTT
[ENA]
¡û
>W1610889333
LRPL01000089
Bacillota
Anaerococcus hydrogenalis [LRPL]
17118
17043
-
Lys
CTT
[ENA]
¡û
>W1710022364
AUYY01000009
Bacillota
Clostridium botulinum B2 267 [AUYY]
148164
148089
-
Lys
CTT
[ENA]
¡û
>W1710022575
AUZC01000013
Bacillota
Clostridium botulinum F 357 [AUZC]
55804
55729
-
Lys
CTT
[ENA]
¡û
>W1710087406
BDQO01000197
Bacillota
Clostridium botulinum [BDQO]
305
380
+
Lys
CTT
[ENA]
¡û
>W1710521484
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
144306
144381
+
Lys
CTT
[ENA]
¡û
>W1710521488
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
144699
144774
+
Lys
CTT
[ENA]
¡û
>W1710723243
LFOT01000019
Bacillota
Clostridium botulinum [LFOT]
70406
70481
+
Lys
CTT
[ENA]
¡û
>W1710723302
LFOU01000068
Bacillota
Clostridium botulinum [LFOU]
83
158
+
Lys
CTT
[ENA]
¡û
>W1710723341
LFOV01000004
Bacillota
Clostridium botulinum [LFOV]
299807
299882
+
Lys
CTT
[ENA]
¡û
>W1710723896
LFPF01000024
Bacillota
Clostridium botulinum [LFPF]
167
92
-
Lys
CTT
[ENA]
¡û
>W1710724219
LFPK01000023
Bacillota
Clostridium sporogenes botulinum [LFPK]
83
158
+
Lys
CTT
[ENA]
¡û
>W1710724496
LFPP01000013
Bacillota
Clostridium botulinum [LFPP]
83
158
+
Lys
CTT
[ENA]
¡û
>W1710725754
LFQV01000092
Bacillota
Clostridium botulinum [LFQV]
165
240
+
Lys
CTT
[ENA]
¡û
>W1710726271
LFRD01000075
Bacillota
Clostridium botulinum [LFRD]
83
158
+
Lys
CTT
[ENA]
¡û
>W1710727260
LFSL01000112
Bacillota
Clostridiales bacterium DTU058 [LFSL]
13450
13525
+
Lys
CTT
[ENA]
¡û
>W1710761964
LIIS01000042
Bacillota
Clostridium botulinum [LIIS]
509
434
-
Lys
CTT
[ENA]
¡û
>W1710770077
LITJ01000081
Bacillota
Clostridium sp. L74 [LITJ]
25
100
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK