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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236120 (13 seq.)
>WENV181172680
OEIV010913619
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
103
179
+
Trp
CCA
[ENA]
¡û
>W1911148350
NPEU01000015
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
6128
6204
+
Trp
CCA
[ENA]
¡û
>W1911148523
NPEX01000234
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
4827
4751
-
Trp
CCA
[ENA]
¡û
>W1911653540
QDFX01000028
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
374
450
+
Trp
CCA
[ENA]
¡û
>W2011021281
NPEU01000015
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
6128
6204
+
Trp
CCA
[ENA]
¡û
>W2011021454
NPEX01000234
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
4827
4751
-
Trp
CCA
[ENA]
¡û
>W2011237099
QDFX01000028
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
374
450
+
Trp
CCA
[ENA]
¡û
>W2011950406
UWOC01000159
Alphaproteobacteria
Rhodoplanes piscinae [UWOC]
40120
40044
-
Trp
CCA
[ENA]
¡û
>W2110278850
JACWCT010000141
Alphaproteobacteria
Methylobacterium ajmalii IF7SW-B2 [JACWCT]
10526
10450
-
Trp
CCA
[ENA]
¡û
>W2110752127
NHSK01000061
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NHSK]
16774
16850
+
Trp
CCA
[ENA]
¡û
>C161001158
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
4405415
4405491
+
Trp
CCA
[Ensembl]
¡û
>W121103225
AKZI01000095
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
4856
4780
-
Trp
CCA
[ENA]
¡û
>W1710560681
FONO01000013
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
1319
1395
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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