This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23627 (107 seq.)
>W1710785195
LJHQ01000059
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
22655
22566
-
Ser
GGA
[ENA]
¡û
>W1710858041
LMAR01000067
Alphaproteobacteria
Bosea thiooxidans [LMAR]
29557
29646
+
Ser
GGA
[ENA]
¡û
>W1710860550
LMCZ01000001
Alphaproteobacteria
Rhizobium sp. Root1204 [LMCZ]
570675
570764
+
Ser
GGA
[ENA]
¡û
>W1710863220
LMEY01000001
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
1266806
1266895
+
Ser
GGA
[ENA]
¡û
>W1710863346
LMFA01000023
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
98093
98004
-
Ser
GGA
[ENA]
¡û
>W1710863362
LMFB01000012
Alphaproteobacteria
Rhizobium sp. Root483D2 [LMFB]
222232
222143
-
Ser
GGA
[ENA]
¡û
>W1710867391
LMIF01000031
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
185659
185748
+
Ser
GGA
[ENA]
¡û
>W1710869484
LMJT01000014
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
18708
18619
-
Ser
GGA
[ENA]
¡û
>W1710869546
LMJU01000021
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
163547
163458
-
Ser
GGA
[ENA]
¡û
>W1710874802
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
1203862
1203951
+
Ser
GGA
[ENA]
¡û
>W1710875229
LMOF01000006
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
144061
143972
-
Ser
GGA
[ENA]
¡û
>W1710877594
LMQF01000055
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
80822
80911
+
Ser
GGA
[ENA]
¡û
>W1710877620
LMQG01000023
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
253739
253650
-
Ser
GGA
[ENA]
¡û
>W1710878807
LMRG01000012
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
658301
658212
-
Ser
GGA
[ENA]
¡û
>W1710879504
LMRT01000001
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
721463
721552
+
Ser
GGA
[ENA]
¡û
>W1710894006
LNFH01000407
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
726
637
-
Ser
GGA
[ENA]
¡û
>W1711072960
LSIB01000156
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
107065
106976
-
Ser
GGA
[ENA]
¡û
>W1711073117
LSIG01000027
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
6763
6852
+
Ser
GGA
[ENA]
¡û
>W1711073286
LSIK01000054
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
18990
19079
+
Ser
GGA
[ENA]
¡û
>W1711074343
LSJL01000035
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
4474
4385
-
Ser
GGA
[ENA]
¡û
>W1711074492
LSJP01000022
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
4321
4232
-
Ser
GGA
[ENA]
¡û
>W1711074586
LSJR01000081
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
4033
3944
-
Ser
GGA
[ENA]
¡û
>W1711074749
LSJU01001334
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
778
867
+
Ser
GGA
[ENA]
¡û
>W1711074863
LSJX01000231
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
4552
4463
-
Ser
GGA
[ENA]
¡û
>W1711075574
LSKN01000201
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
4321
4232
-
Ser
GGA
[ENA]
¡û
>W131165053
ARBG01000194
Alphaproteobacteria
Rhizobium giardinii bv. giardinii H152 [ARBG]
111704
111615
-
Ser
GGA
[ENA]
¡û
>W131222220
AUBC01000001
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
392287
392376
+
Ser
GGA
[ENA]
¡û
>W1711502368
MKSQ01000005
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
642075
641986
-
Ser
GGA
[ENA]
¡û
>C171049994
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
639170
639081
-
Ser
GGA
-
¡û
>C171057733
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
1868013
1868102
+
Ser
GGA
-
¡û
>W141063699
APJE01000003
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
20198
20109
-
Ser
GGA
[ENA]
¡û
>WENV181166805
OEIU01002324
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
7148
7237
+
Ser
GGA
[ENA]
¢þ
>WENV181167019
OEIU01006511
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2122
2033
-
Ser
GGA
[ENA]
¢þ
>WENV181227444
OFDN01010663
[OFDN] hot springs metagenome; Water
1290
1379
+
Ser
GGA
[ENA]
¢þ
>WENV181415173
OGCL01005181
[OGCL] hot springs metagenome; Hot spring water
2047
2136
+
Ser
GGA
[ENA]
¢þ
>W141213223
AZRT01000082
Alphaproteobacteria
Brucella rhizosphaerae SJY1 [AZRT]
3248
3159
-
Ser
GGA
[ENA]
¡û
>W141243607
CAJQ02000027
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
111067
110978
-
Ser
GGA
[ENA]
¡û
>WENV183725945
PJQF01043391
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
379
290
-
Ser
GGA
[ENA]
¢þ
>WENV183733661
PJTY01009788
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1188
1099
-
Ser
GGA
[ENA]
¢þ
>WENV183749321
PPFU01149965
[PPFU] hypolithon metagenome; Antarctic Hypolithon
96
7
-
Ser
GGA
[ENA]
¢þ
>WENV170653238
JRYI01028499
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
287
198
-
Ser
GGA
[ENA]
¢þ
>WENV170680710
LFEF01012884
[LFEF] freshwater metagenome; waterbloom
4048
4137
+
Ser
GGA
[ENA]
¢þ
>WENV170709672
LNFM01000576
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
37158
37247
+
Ser
GGA
[ENA]
¢þ
>WENV170711837
LNFM01007745
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3952
4041
+
Ser
GGA
[ENA]
¢þ
>WENV170712538
LNFM01014603
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
90
1
-
Ser
GGA
[ENA]
¢þ
>WENV170714645
LNFM01091430
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5
94
+
Ser
GGA
[ENA]
¢þ
>C181063204
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
4981621
4981710
+
Ser
GGA
-
¡û
>C191014009
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
3474872
3474961
+
Ser
GGA
-
¡û
>C191170850
CP039690
Alphaproteobacteria
Phreatobacter stygius KCTC 52518 [CP039690]
2741637
2741726
+
Ser
GGA
-
¡û
>W141805314
JPKG01000045
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
14043
14132
+
Ser
GGA
[ENA]
¡û
>W141815827
JQJJ01000016
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
150911
150822
-
Ser
GGA
[ENA]
¡û
>W141816000
JQJO01000001
Alphaproteobacteria
Rhizobium sp. OK665 [JQJO]
243065
242976
-
Ser
GGA
[ENA]
¡û
>W141819254
JQME01000001
Alphaproteobacteria
Rhizobium sp. CF258 [JQME]
811858
811947
+
Ser
GGA
[ENA]
¡û
>W141819324
JQMF01000009
Alphaproteobacteria
Rhizobium sp. CF097 [JQMF]
218925
219014
+
Ser
GGA
[ENA]
¡û
>W141821298
JQNM01000001
Alphaproteobacteria
Rhizobium sp. YR295 [JQNM]
355771
355682
-
Ser
GGA
[ENA]
¡û
>W1910501737
FYAS01000048
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
5435
5524
+
Ser
GGA
[ENA]
¡û
>W1910635421
LNCQ01000043
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
57049
56960
-
Ser
GGA
[ENA]
¡û
>W1910840108
MZXT01000001
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
354435
354346
-
Ser
GGA
[ENA]
¡û
>W1910840168
MZXU01000010
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
237274
237363
+
Ser
GGA
[ENA]
¡û
>W1910847645
NBDP01000007
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
236063
236152
+
Ser
GGA
[ENA]
¡û
>W1810252005
PQFZ01000004
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
56290
56379
+
Ser
GGA
[ENA]
¡û
>W1810463330
PZZL01000009
Alphaproteobacteria
Phreatobacter oligotrophus DSM 25521 [PZZL]
5161
5250
+
Ser
GGA
[ENA]
¡û
>W1810463348
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
1575769
1575858
+
Ser
GGA
[ENA]
¡û
>W1810676897
QKMI01000005
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
1453
1364
-
Ser
GGA
[ENA]
¡û
>W1810783321
QQTO01000027
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
9855
9766
-
Ser
GGA
[ENA]
¡û
>W1810783367
QQTP01000020
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
9855
9766
-
Ser
GGA
[ENA]
¡û
>SRA1015048
SRR023845.435741
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
54
143
+
Ser
GGA
[SRA]
>W1511353000
JROW01000031
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
16889
16800
-
Ser
GGA
[ENA]
¡û
>C121002989
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
3515357
3515268
-
Ser
GGA
-
¡û
>W1610550608
JXTJ01000002
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
150793
150882
+
Ser
GGA
[ENA]
¡û
>W1610616413
LGLV01000004
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
566719
566808
+
Ser
GGA
[ENA]
¡û
>W1610649001
LJHQ01000059
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
22655
22566
-
Ser
GGA
[ENA]
¡û
>W1610720387
LMAR01000067
Alphaproteobacteria
Bosea thiooxidans [LMAR]
29557
29646
+
Ser
GGA
[ENA]
¡û
>W1610722896
LMCZ01000001
Alphaproteobacteria
Rhizobium sp. Root1204 [LMCZ]
570675
570764
+
Ser
GGA
[ENA]
¡û
>W1610725566
LMEY01000001
Alphaproteobacteria
Rhizobium sp. Root1334 [LMEY]
1266806
1266895
+
Ser
GGA
[ENA]
¡û
>W1610725692
LMFA01000023
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
98093
98004
-
Ser
GGA
[ENA]
¡û
>W1610725708
LMFB01000012
Alphaproteobacteria
Rhizobium sp. Root483D2 [LMFB]
222232
222143
-
Ser
GGA
[ENA]
¡û
>W1610729737
LMIF01000031
Alphaproteobacteria
Rhizobium sp. Root73 [LMIF]
185659
185748
+
Ser
GGA
[ENA]
¡û
>W1610731830
LMJT01000014
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
18708
18619
-
Ser
GGA
[ENA]
¡û
>W1610731892
LMJU01000021
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
163547
163458
-
Ser
GGA
[ENA]
¡û
>W1610737148
LMNX01000001
Alphaproteobacteria
Rhizobium sp. Leaf306 [LMNX]
1203862
1203951
+
Ser
GGA
[ENA]
¡û
>W1610737575
LMOF01000006
Alphaproteobacteria
Rhizobium sp. Leaf321 [LMOF]
144061
143972
-
Ser
GGA
[ENA]
¡û
>W1610739940
LMQF01000055
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
80822
80911
+
Ser
GGA
[ENA]
¡û
>W1610739966
LMQG01000023
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
253739
253650
-
Ser
GGA
[ENA]
¡û
>W1610741153
LMRG01000012
Alphaproteobacteria
Rhizobium sp. Leaf453 [LMRG]
658301
658212
-
Ser
GGA
[ENA]
¡û
>W1610741850
LMRT01000001
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
721463
721552
+
Ser
GGA
[ENA]
¡û
>W1610754272
LNFH01000407
Alphaproteobacteria
Rhizobiales bacterium Ga0077556 [LNFH]
726
637
-
Ser
GGA
[ENA]
¡û
>W1610912220
LSIB01000156
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
107065
106976
-
Ser
GGA
[ENA]
¡û
>W1610912422
LSIG01000027
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
6763
6852
+
Ser
GGA
[ENA]
¡û
>W1610912591
LSIK01000054
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
18990
19079
+
Ser
GGA
[ENA]
¡û
>W1610913648
LSJL01000035
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
4474
4385
-
Ser
GGA
[ENA]
¡û
>W1610913797
LSJP01000022
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
4321
4232
-
Ser
GGA
[ENA]
¡û
>W1610913891
LSJR01000081
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
4033
3944
-
Ser
GGA
[ENA]
¡û
>W1610914054
LSJU01001334
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
778
867
+
Ser
GGA
[ENA]
¡û
>W1610914168
LSJX01000231
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
4552
4463
-
Ser
GGA
[ENA]
¡û
>W1610914879
LSKN01000201
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
4321
4232
-
Ser
GGA
[ENA]
¡û
>W1710064209
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
1548914
1548825
-
Ser
GGA
[ENA]
¡û
>W1710515696
FNBZ01000004
Alphaproteobacteria
Bosea robiniae [FNBZ]
72581
72670
+
Ser
GGA
[ENA]
¡û
>W1710538971
FNUY01000014
Alphaproteobacteria
Bosea lathyri [FNUY]
85345
85256
-
Ser
GGA
[ENA]
¡û
>W1710540103
FNWM01000004
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
339531
339620
+
Ser
GGA
[ENA]
¡û
>W1710544024
FOAN01000003
Alphaproteobacteria
Bosea lupini [FOAN]
366537
366448
-
Ser
GGA
[ENA]
¡û
>W1710556978
FOKP01000002
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
305493
305582
+
Ser
GGA
[ENA]
¡û
>W1710564911
FOQV01000003
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
800395
800306
-
Ser
GGA
[ENA]
¡û
>W1710596453
FTMO01000014
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
57641
57552
-
Ser
GGA
[ENA]
¡û
>W1710603300
FUYX01000018
Alphaproteobacteria
Bosea thiooxidans [FUYX]
23810
23899
+
Ser
GGA
[ENA]
¡û
>W1710660443
JXTJ01000002
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
150793
150882
+
Ser
GGA
[ENA]
¡û
>W1710737659
LGLV01000004
Alphaproteobacteria
Pararhizobium polonicum [LGLV]
566719
566808
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK