This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236921 (25 seq.)
>W1711710656
MSZQ01000007
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
126245
126321
+
Met
CAT
[ENA]
¡û
>W1711711870
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
1705256
1705180
-
Met
CAT
[ENA]
¡û
>C171098223
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
67072
67148
+
Met
CAT
-
¡û
>C171115502
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1395218
1395294
+
Met
CAT
-
¡û
>W141237741
BBJQ01000010
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
14882
14806
-
Met
CAT
[ENA]
¡û
>WENV170645910
JQGF01000505
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
4904
4828
-
Met
CAT
[ENA]
¢þ
>WENV170655192
JTFN01010904
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
23
99
+
Met
CAT
[ENA]
¢þ
>WENV170655254
JTFN01014690
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2614
2538
-
Met
CAT
[ENA]
¢þ
>WENV170655647
JTFN01054494
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
565
489
-
Met
CAT
[ENA]
¢þ
>WENV170655909
JTFN01094628
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
242
318
+
Met
CAT
[ENA]
¢þ
>WENV170655934
JTFN01097679
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
77
1
-
Met
CAT
[ENA]
¢þ
>WENV170656152
JTFO01001352
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
23
99
+
Met
CAT
[ENA]
¢þ
>WENV170656462
JTFO01017615
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
24
100
+
Met
CAT
[ENA]
¢þ
>WENV170656987
JTFO01066456
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
205
281
+
Met
CAT
[ENA]
¢þ
>WENV170657069
JTFO01076173
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
77
1
-
Met
CAT
[ENA]
¢þ
>WENV170684780
LFRM01058285
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
938
1014
+
Met
CAT
[ENA]
¢þ
>C181053220
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
1349647
1349723
+
Met
CAT
-
¡û
>C181088579
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
1119523
1119599
+
Met
CAT
-
¡û
>C191085257
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1691719
1691795
+
Met
CAT
-
¡û
>W1810583908
QEXO01000004
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
126936
127012
+
Met
CAT
[ENA]
¡û
>W1511321007
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
131976
132052
+
Met
CAT
[ENA]
¡û
>W1511537493
JZBR01000009
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
713721
713645
-
Met
CAT
[ENA]
¡û
>C161051359
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3498344
3498420
+
Met
CAT
[Ensembl]
¡û
>W121091229
AKMR01000014
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
13829
13753
-
Met
CAT
[ENA]
¡û
>W1610921538
LSUO01000025
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
104179
104255
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK